Article open access publication

Human genome meeting 2016

Human Genomics, Springer Nature, ISSN 1473-9542

Volume 10, Suppl 1, 2016

DOI:10.1186/s40246-016-0063-5, Dimensions: pub.1011819788, PMC: PMC4896275, PMID: 27294413,

Authors

Wang, Y. (2)
Huang, R. (1)
Wood, T. (1)
Luo, F. (2)
Gelernter, J. (3) (4) (5)
Lin, X. * (6)
Wu, Y. (6)
Chen, L. (6)
Yap, F. (9)
Kwek, K. (9)
Saw, S M (7)
Gluckman, P. D. (6) (11)
Kapoor, A. * (12)
Lee, D. (12)
Maercker, C. * (13)
Graf, F. (14)
Stamoulis, G. * (15)
Ribaux, P. (15)
Borel, C. (15)
Antonarakis, S. E. (15) (16)
Kumar, S. * (17)
Curran, J. (17)
Kapoor, A. (12)
Auer, D. (12)
Donti, T. R. * (19)
Miller, M. (19)
Atwal, P. (19)
Cardon, A. (19)
Bacino, C. (19)
Emrick, L. (19)
Baumer, F. (23)
Porter, B. (23)
Bonnen, P. (19)
Graham, B. (19)
Sutton, R. (19)
Sun, Q. (19)
Elsea, S. (19)
Hu, Z. * (24)
Wang, P. (24)
Zhu, Y. (25)
Zhao, J. (25)
Xiong, M. (24)
Iorio, M. (29)
Baroni, S. (29)
Tanaka, Y. (31)
Kawaji, H. (31)
Itoh, M. (30)
Semple, C. A. * (36)
Shirts, B. (37)
Burt, A. (37)
Beyers, P. (37)
Nefcy, C. (37)
Hisama, F. (37)
Smith, J. (37)
Nassir, R. (39)
Zubair, N. (40)
Peters, U. (37) (40)
Jarvik, G. (37)
Menghi, F. * (41)
Inaki, K. (41)
Woo, X. (41)
Kumar, P. (41)
Grzeda, K. (41)
Kim, H. (41)
Ucar, D. (41)
Keck, J. (42)
Chuang, J. (41)
Liu, E. T. (41)
Ji, B. (41)
Tyler, A. (41)
Ananda, G. (41)
Carter, G. * (41)
Nikbakht, H. * (43)
Jabado, N. (43)
Shroff, R. (45)
Wolff, R. (45)
Javle, M. (45)
Bravo, L. (46)
Gomez, H. (47)
Rolfo, C. (48)
Pinto, J. A. * (47)
Chin, L. (49)
Patterson, S. * (41)
Statz, C. (41)
Mockus, S. (41)
King, B. (51)
Kaya, G. (16)
Zoete, V. (53)
Sharpe, H. (55)
McKee, T. (16)
Ribaux, P. (15)
Verdan, C. (16)
Sumara, O. (57)
Eilers, M. (57)
Lincoln, S. * (59)
Kurian, A. (60)
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Ford, J. (60)
Peters, T. L. * (19)
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Lam, E. T. (63)
Cao, H. (63)
Ma, L. (65)
King, A. (64)
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Chung, W. K. (65) (66)
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Mohammed, A. (133)
Owaidah, T. (136)

* Corresponding author

Affiliations

Organisations

  1. (1) Greenwood Genetic Center, grid.418307.9
  2. (2) Clemson University, grid.26090.3d
  3. (3) Department Psychiatry, Yale Sch Med and VA CT Healthcare Center, West Haven, CT, USA
  4. (4) Department Genetics, Yale Sch Med and VA CT Healthcare Center, West Haven, CT, USA
  5. (5) Department Neurobiology, Yale Sch Med and VA CT Healthcare Center, West Haven, CT, USA
  6. (6) Singapore Institute for Clinical Sciences, grid.452264.3
  7. (7) National University of Singapore, grid.4280.e
  8. (8) University of British Columbia, grid.17091.3e
  9. (9) KK Women's and Children's Hospital, grid.414963.d
  10. (10) University Hospital Southampton NHS Foundation Trust, grid.430506.4
  11. (11) University of Auckland, grid.9654.e
  12. (12) Johns Hopkins University, grid.21107.35
  13. (13) Esslingen University of Applied Sciences, grid.448696.1
  14. (14) German Cancer Research Center, grid.7497.d
  15. (15) University of Geneva, grid.8591.5
  16. (16) University Hospital of Geneva, grid.150338.c
  17. (17) The University of Texas Rio Grande Valley, grid.449717.8
  18. (18) Lawrence Berkeley National Laboratory, grid.184769.5
  19. (19) Baylor College of Medicine, grid.39382.33
  20. (20) University of Naples Federico II, grid.4691.a
  21. (21) Metabolon (United States), grid.429438.0
  22. (22) Tawam Hospital, grid.416924.c
  23. (23) Stanford University, grid.168010.e
  24. (24) The University of Texas Health Science Center at Houston, grid.267308.8
  25. (25) Tulane University, grid.265219.b
  26. (26) Rush Alzheimer’s Disease Center, Rush University, Chicago, IL, USA
  27. (27) National Institute of Genomic Medicine, grid.452651.1
  28. (28) FUCAM, Mexico City, Mexico
  29. (29) Fondazione IRCCS Istituto Nazionale dei Tumori, grid.417893.0
  30. (30) Division of Genomic Technologies, RIKEN Center for Life Science Technologies, Yokohama, Japan
  31. (31) Preventive Medicine and Applied Genomics unit, RIKEN Advanced Center for Computing and Communication, Yokohama, Japan
  32. (32) University of Copenhagen, grid.5254.6, KU
  33. (33) University of Western Australia, grid.1012.2
  34. (34) RIKEN Preventive Medicine & Diagnosis Innovation Program, Wako, Japan
  35. (35) Harry Perkins Institute of Medical Research, grid.431595.f
  36. (36) Medical Research Council Institute of Genetics and Molecular Medicine, grid.415854.9
  37. (37) University of Washington, grid.34477.33
  38. (38) University of Michigan, grid.214458.e
  39. (39) University of California, Davis, grid.27860.3b
  40. (40) Fred Hutchinson Cancer Research Center, grid.270240.3
  41. (41) Jackson Laboratory, grid.249880.f
  42. (42) The Jackson Laboratory, Sacramento, CA, USA
  43. (43) McGill University, grid.14709.3b
  44. (44) Université de Sherbrooke, grid.86715.3d
  45. (45) The University of Texas MD Anderson Cancer Center, grid.240145.6
  46. (46) Universidad Privada San Juan Bautista, grid.441740.2
  47. (47) Unidad de Investigación Básica y Traslacional, Oncosalud-AUNA, Lima, Peru
  48. (48) Antwerp University Hospital, grid.411414.5
  49. (49) The University of Texas System, grid.55460.32
  50. (50) Department of Dermatology, Hospital of Valais, Sion, Switzerland
  51. (51) New York University, grid.137628.9
  52. (52) Department of Physics, University of Connecticut, Connecticut, USA
  53. (53) Swiss Institute of Bioinformatics, grid.419765.8
  54. (54) Russian Academy of Sciences, grid.4886.2
  55. (55) Roche (United States), grid.418158.1
  56. (56) University of Paris 7, Hospital of Saint-Louis, Paris, France
  57. (57) University of Würzburg, grid.8379.5
  58. (58) Mahidol University, grid.10223.32
  59. (59) Invitae (United States), grid.465210.4
  60. (60) Stanford Medicine, grid.240952.8
  61. (61) Massachusetts General Hospital, grid.32224.35
  62. (62) Texas Children's Hospital, grid.416975.8
  63. (63) BioNano Genomics (United States), grid.470262.5
  64. (64) Regeneron (United States), grid.418961.3
  65. (65) Columbia University, grid.21729.3f
  66. (66) Columbia University Medical Center, grid.239585.0
  67. (67) Molecular Insight Research Foundation, Glendale, ᅟ
  68. (68) University of Iowa, grid.214572.7
  69. (69) Biology, Raboud University Medical Center, Nijmegen, Netherlands
  70. (70) Service d’Exploration de la vision et Neuro-ophtalmologie CHRU, Service d’Exploration de la vision et Neuro-ophtalmologie CHRU, Lille, France
  71. (71) University of Arizona, grid.134563.6
  72. (72) Heidelberg University, grid.7700.0
  73. (73) West Virginia University, grid.268154.c
  74. (74) FS Consulting, Salem, MA, USA
  75. (75) Center for Inherited Disease Research, JHUSOM, Baltimore, MD, USA
  76. (76) Spiral Genetics, Seattle, WA, USA
  77. (77) RIKEN, grid.7597.c
  78. (78) University of Eastern Piedmont Amadeo Avogadro, grid.16563.37
  79. (79) Area of Neuroscience, SISSA, International School for Advanced Studies, Trieste, Italy
  80. (80) National Human Genome Research Institute, grid.280128.1
  81. (81) Government of Western Australia Department of Health, grid.413880.6
  82. (82) National Center for Advancing Translational Sciences, grid.429651.d
  83. (83) Keio University, grid.26091.3c
  84. (84) University of Pecs, grid.9679.1
  85. (85) Istituto Superiore di Sanità, grid.416651.1
  86. (86) Mayo Clinic, grid.66875.3a
  87. (87) Baylor University, grid.252890.4
  88. (88) University of Tennessee at Knoxville, grid.411461.7
  89. (89) Dartmouth College, grid.254880.3
  90. (90) University of New Mexico, grid.266832.b
  91. (91) EPS Software Corp, Spring, TX, USA
  92. (92) Murdoch Children's Research Institute, grid.1058.c
  93. (93) Nara Institute of Science and Technology, grid.260493.a
  94. (94) Centre for DNA Fingerprinting and Diagnostics, grid.145749.a
  95. (95) Beijing Institute of Genomics, grid.464209.d
  96. (96) Universiti of Malaysia Sabah, grid.265727.3
  97. (97) Shanghai Institutes for Biological Sciences, grid.419092.7
  98. (98) Universiti Teknologi MARA, grid.412259.9
  99. (99) Monash University Malaysia, grid.440425.3
  100. (100) Genome Research Foundation, grid.410888.d
  101. (101) Jeffrey Cheah School of Medicine and Health Sciences, Monash University Sunway Campu, Petaling Jaya, Malaysia
  102. (102) UCSI University, grid.444472.5
  103. (103) Peter MacCallum Cancer Centre, grid.1055.1
  104. (104) Institute of Genomics and Integrative Biology, grid.417639.e
  105. (105) Department of Medicine, Sonam Norbu Memorial Hospital, Leh, Ladakh, India
  106. (106) Nazarbayev University, grid.428191.7
  107. (107) Medical University of Graz, grid.11598.34
  108. (108) National Scientific Cardiac Surgery Center, Astana, Kazakhstan
  109. (109) Swift Biosciences Inc, Ann Arbor, MI, USA
  110. (110) Duke University, grid.26009.3d
  111. (111) Texas Biomedical Research Institute, grid.250889.e
  112. (112) University of California, Los Angeles, grid.19006.3e
  113. (113) Oregon National Primate Research Center, grid.410436.4
  114. (114) Genomics & Microbiology Research Laboratory, NC Museum of Natural Sciences, Raleigh, NC, USA
  115. (115) Emory University, grid.189967.8
  116. (116) University of Pennsylvania, grid.25879.31
  117. (117) University of Mississippi Medical Center, grid.410721.1
  118. (118) University of Wisconsin–Madison, grid.14003.36
  119. (119) Epidemiology, Human Genetics & Environmental Sciences, ᅟ, ᅟ
  120. (120) University of Connecticut, grid.63054.34
  121. (121) National Cancer Institute, grid.48336.3a
  122. (122) St. Jude Children's Research Hospital, grid.240871.8
  123. (123) National Cancer Institute, NIH, DHHS, Rockville, USA
  124. (124) Changhua Christian Hospital, grid.413814.b
  125. (125) R & D, MIB Co., Tehran, Iran, Islamic Republic Of
  126. (126) Proteomics, Faraby Eye Hospital, Tehran, Iran, Islamic Republic Of
  127. (127) King Saud University, grid.56302.32
  128. (128) National Medical Holding, grid.490440.d
  129. (129) UAE Genetic Diseases Association, Dubai, United Arab Emirates
  130. (130) University of South Carolina, grid.254567.7
  131. (131) University of Illinois at Urbana Champaign, grid.35403.31
  132. (132) Ain Shams University, grid.7269.a
  133. (133) Umm al-Qura University, grid.412832.e
  134. (134) University of Maine, grid.21106.34
  135. (135) King Saud bin Abdulaziz University for Health Sciences, grid.412149.b
  136. (136) King Faisal Specialist Hospital & Research Centre, grid.415310.2
  137. (137) Department of Pediatric, Madinah Maternity and Children’s Hospital, Madinah, Saudi Arabia
  138. (138) King Fahd Medical City, grid.415277.2
  139. (139) King Abdullah Medical City, grid.498593.a
  140. (140) Medical Genetics, King Salman Armed Forces Hospital, Tabuk, Saudi Arabia
  141. (141) Center for Life Science Technologies, RIKEN Yokohama, Yokohama City, Kanagawa, Japan
  142. (142) RIKEN Center for Brain Science, grid.474690.8
  143. (143) University of Houston, grid.266436.3
  144. (144) Technical University of Denmark, grid.5170.3, DTU
  145. (145) Netaji Subhas Chandra Bose Cancer Research Institute, grid.429728.2
  146. (146) University of Houston - Downtown, grid.410446.3
  147. (147) National Institute of Biomedical Genomics, grid.410872.8
  148. (148) Chittaranjan National Cancer Institute, grid.418573.c
  149. (149) Human Genetics, Faculty of Medicine, Alexandria, Egypt
  150. (150) Microbiology, Faculty of Medicine, Alexandria, Egypt
  151. (151) Clinical and Experimental Surgery, Faculty of Medicine, Alexandria, Egypt
  152. (152) Alexandria University, grid.7155.6
  153. (153) Clinical Oncology and Nuclear Medicine, Faculty of Medicine, Alexandria, Egypt
  154. (154) Lucile Packard Children's Hospital, grid.414123.1
  155. (155) Directed Genomics, ᅟ, USA
  156. (156) New England Biolabs, grid.273406.4
  157. (157) University of North Dakota, grid.266862.e
  158. (158) National Autonomous University of Mexico, grid.9486.3
  159. (159) Mexican Social Security Institute, grid.419157.f
  160. (160) Diagnóstico Molecular H1N1-Influenza , UMAE-IMSS, Mérida, Yucatán, Mexico
  161. (161) Hospital Infantil de México Federico Gómez, grid.414757.4
  162. (162) Palladin Institute of Biochemistry, grid.419966.5
  163. (163) Department of Medical Genetics and Oncogene, Morocco; Medical Genetics, CHU Hassan II Fes, Fes, Morocco
  164. (164) Evolutionary Genetics, Institute of Medical Genetics, ᅟ, Russian Federation
  165. (165) Siberian State Medical University, grid.412593.8
  166. (166) University of the Philippines System, grid.443239.b
  167. (167) Philippine General Hospital, grid.417272.5
  168. (168) Nationwide Children's Hospital, grid.240344.5
  169. (169) Medical Laboratory Technology, ᅟ, Saudi Arabia
  170. (170) King Abdulaziz University, grid.412125.1
  171. (171) Advanced Molecular Diagnostics Laboratory, ᅟ, Canada
  172. (172) Princess Margaret Cancer Centre, grid.415224.4
  173. (173) National Institute of Arthritis and Musculoskeletal and Skin Diseases, grid.420086.8
  174. (174) National Institutes of Health, grid.94365.3d
  175. (175) Institute of Applied Cancer Science, ᅟ, USA
  176. (176) Genomic Medicine, University of Texas, ᅟ, ᅟ
  177. (177) University of Edinburgh, grid.4305.2
  178. (178) Spiral Genetics, Seattle, Washington, USA
  179. (179) Arabian Gulf University, grid.411424.6
  180. (180) Central Laboratory, Ministry of Science and Technology, ᅟ, Sudan
  181. (181) Sudan University of Science and Technology, grid.440840.c
  182. (182) Universidad Autónoma de Nuevo León, grid.411455.0
  183. (183) Instituto Nacional de Ciencias Médicas y Nutrición Salvador Zubirán, grid.416850.e
  184. (184) Computational Genomics, Nacional de Medicina Genomica, Mexico City, Mexico
  185. (185) Cancer Genomics Laboratory, Nacional de Medicina Genomica, Mexico City, Mexico
  186. (186) King Abdul Aziz University Hospital, grid.412126.2
  187. (187) Istanbul Technical University, grid.10516.33
  188. (188) Directed Genomics, Ipswich, USA
  189. (189) DNA Diagnostics Center (United States), grid.504278.c
  190. (190) Watershed DNA, Crozet, USA
  191. (191) Vibrant Gene Consulting, Cambridge, USA
  192. (192) Agilent Technologies (Germany), grid.472745.7
  193. (193) Agilent Technologies UK Ltd, Agilent Technologies UK Ltd., Edinburgh, UK
  194. (194) NIH/NLM/NCBI, Bethesda, USA
  195. (195) Institute of Human Genetics, Department of Molecular Biology & Genomics, Centre for Health Sciences, ᅟ, Mexico
  196. (196) Rheumatoloty, Centre for Health Sciences, ᅟ, Mexico
  197. (197) Public Health, Centre for Health Sciences, ᅟ, Mexico
  198. (198) University of Guadalajara, grid.412890.6
  199. (199) Sri Venkateswara University, grid.412313.6
  200. (200) Department of Basic Sciences, College of Science and Health Professions, King Saud Bin Abdul Aziz University for Health Sciences, Riyadh, Saudi Arabia
  201. (201) University Hospital Regensburg, grid.411941.8
  202. (202) IgNova GmbH, Oberursel, Germany
  203. (203) Alfaisal University, grid.411335.1
  204. (204) National University of Pharmacy, grid.445562.4

Description

Table of contents

O1 The metabolomics approach to autism: identification of biomarkers for early detection of autism spectrum disorder

A. K. Srivastava, Y. Wang, R. Huang, C. Skinner, T. Thompson, L. Pollard, T. Wood, F. Luo, R. Stevenson

O2 Phenome-wide association study for smoking- and drinking-associated genes in 26,394 American women with African, Asian, European, and Hispanic descents

R. Polimanti, J. Gelernter

O3 Effects of prenatal environment, genotype and DNA methylation on birth weight and subsequent postnatal outcomes: findings from GUSTO, an Asian birth cohort

X. Lin, I. Y. Lim, Y. Wu, A. L. Teh, L. Chen, I. M. Aris, S. E. Soh, M. T. Tint, J. L. MacIsaac, F. Yap, K. Kwek, S. M. Saw, M. S. Kobor, M. J. Meaney, K. M. Godfrey, Y. S. Chong, J. D. Holbrook, Y. S. Lee, P. D. Gluckman, N. Karnani, GUSTO study group

O4 High-throughput identification of specific qt interval modulating enhancers at the SCN5A locus

A. Kapoor, D. Lee, A. Chakravarti

O5 Identification of extracellular matrix components inducing cancer cell migration in the supernatant of cultivated mesenchymal stem cells

C. Maercker, F. Graf, M. Boutros

O6 Single cell allele specific expression (ASE) IN T21 and common trisomies: a novel approach to understand DOWN syndrome and other aneuploidies

G. Stamoulis, F. Santoni, P. Makrythanasis, A. Letourneau, M. Guipponi, N. Panousis, M. Garieri, P. Ribaux, E. Falconnet, C. Borel, S. E. Antonarakis

O7 Role of microRNA in LCL to IPSC reprogramming

S. Kumar, J. Curran, J. Blangero

O8 Multiple enhancer variants disrupt gene regulatory network in Hirschsprung disease

S. Chatterjee, A. Kapoor, J. Akiyama, D. Auer, C. Berrios, L. Pennacchio, A. Chakravarti

O9 Metabolomic profiling for the diagnosis of neurometabolic disorders

T. R. Donti, G. Cappuccio, M. Miller, P. Atwal, A. Kennedy, A. Cardon, C. Bacino, L. Emrick, J. Hertecant, F. Baumer, B. Porter, M. Bainbridge, P. Bonnen, B. Graham, R. Sutton, Q. Sun, S. Elsea

O10 A novel causal methylation network approach to Alzheimer’s disease

Z. Hu, P. Wang, Y. Zhu, J. Zhao, M. Xiong, David A Bennett

O11 A microRNA signature identifies subtypes of triple-negative breast cancer and reveals MIR-342-3P as regulator of a lactate metabolic pathway

A. Hidalgo-Miranda, S. Romero-Cordoba, S. Rodriguez-Cuevas, R. Rebollar-Vega, E. Tagliabue, M. Iorio, E. D’Ippolito, S. Baroni

O12 Transcriptome analysis identifies genes, enhancer RNAs and repetitive elements that are recurrently deregulated across multiple cancer types

B. Kaczkowski, Y. Tanaka, H. Kawaji, A. Sandelin, R. Andersson, M. Itoh, T. Lassmann, the FANTOM5 consortium, Y. Hayashizaki, P. Carninci, A. R. R. Forrest

O13 Elevated mutation and widespread loss of constraint at regulatory and architectural binding sites across 11 tumour types

C. A. Semple

O14 Exome sequencing provides evidence of pathogenicity for genes implicated in colorectal cancer

E. A. Rosenthal, B. Shirts, L. Amendola, C. Gallego, M. Horike-Pyne, A. Burt, P. Robertson, P. Beyers, C. Nefcy, D. Veenstra, F. Hisama, R. Bennett, M. Dorschner, D. Nickerson, J. Smith, K. Patterson, D. Crosslin, R. Nassir, N. Zubair, T. Harrison, U. Peters, G. Jarvik, NHLBI GO Exome Sequencing Project

O15 The tandem duplicator phenotype as a distinct genomic configuration in cancer

F. Menghi, K. Inaki, X. Woo, P. Kumar, K. Grzeda, A. Malhotra, H. Kim, D. Ucar, P. Shreckengast, K. Karuturi, J. Keck, J. Chuang, E. T. Liu

O16 Modeling genetic interactions associated with molecular subtypes of breast cancer

B. Ji, A. Tyler, G. Ananda, G. Carter

O17 Recurrent somatic mutation in the MYC associated factor X in brain tumors

H. Nikbakht, M. Montagne, M. Zeinieh, A. Harutyunyan, M. Mcconechy, N. Jabado, P. Lavigne, J. Majewski

O18 Predictive biomarkers to metastatic pancreatic cancer treatment

J. B. Goldstein, M. Overman, G. Varadhachary, R. Shroff, R. Wolff, M. Javle, A. Futreal, D. Fogelman

O19 DDIT4 gene expression as a prognostic marker in several malignant tumors

L. Bravo, W. Fajardo, H. Gomez, C. Castaneda, C. Rolfo, J. A. Pinto

O20 Spatial organization of the genome and genomic alterations in human cancers

K. C. Akdemir, L. Chin, A. Futreal, ICGC PCAWG Structural Alterations Group

O21 Landscape of targeted therapies in solid tumors

S. Patterson, C. Statz, S. Mockus

O22 Genomic analysis reveals novel drivers and progression pathways in skin basal cell carcinoma

S. N. Nikolaev, X. I. Bonilla, L. Parmentier, B. King, F. Bezrukov, G. Kaya, V. Zoete, V. Seplyarskiy, H. Sharpe, T. McKee, A. Letourneau, P. Ribaux, K. Popadin, N. Basset-Seguin, R. Ben Chaabene, F. Santoni, M. Andrianova, M. Guipponi, M. Garieri, C. Verdan, K. Grosdemange, O. Sumara, M. Eilers, I. Aifantis, O. Michielin, F. de Sauvage, S. Antonarakis

O23 Identification of differential biomarkers of hepatocellular carcinoma and cholangiocarcinoma via transcriptome microarray meta-analysis

S. Likhitrattanapisal

O24 Clinical validity and actionability of multigene tests for hereditary cancers in a large multi-center study

S. Lincoln, A. Kurian, A. Desmond, S. Yang, Y. Kobayashi, J. Ford, L. Ellisen

O25 Correlation with tumor ploidy status is essential for correct determination of genome-wide copy number changes by SNP array

T. L. Peters, K. R. Alvarez, E. F. Hollingsworth, D. H. Lopez-Terrada

O26 Nanochannel based next-generation mapping for interrogation of clinically relevant structural variation

A. Hastie, Z. Dzakula, A. W. Pang, E. T. Lam, T. Anantharaman, M. Saghbini, H. Cao, BioNano Genomics

O27 Mutation spectrum in a pulmonary arterial hypertension (PAH) cohort and identification of associated truncating mutations in TBX4

C. Gonzaga-Jauregui, L. Ma, A. King, E. Berman Rosenzweig, U. Krishnan, J. G. Reid, J. D. Overton, F. Dewey, W. K. Chung

O28 NORTH CAROLINA macular dystrophy (MCDR1): mutations found affecting PRDM13

K. Small, A. DeLuca, F. Cremers, R. A. Lewis, V. Puech, B. Bakall, R. Silva-Garcia, K. Rohrschneider, M. Leys, F. S. Shaya, E. Stone

O29 PhenoDB and genematcher, solving unsolved whole exome sequencing data

N. L. Sobreira, F. Schiettecatte, H. Ling, E. Pugh, D. Witmer, K. Hetrick, P. Zhang, K. Doheny, D. Valle, A. Hamosh

O30 Baylor-Johns Hopkins Center for Mendelian genomics: a four year review

S. N. Jhangiani, Z. Coban Akdemir, M. N. Bainbridge, W. Charng, W. Wiszniewski, T. Gambin, E. Karaca, Y. Bayram, M. K. Eldomery, J. Posey, H. Doddapaneni, J. Hu, V. R. Sutton, D. M. Muzny, E. A. Boerwinkle, D. Valle, J. R. Lupski, R. A. Gibbs

O31 Using read overlap assembly to accurately identify structural genetic differences in an ashkenazi jewish trio

S. Shekar, W. Salerno, A. English, A. Mangubat, J. Bruestle

O32 Legal interoperability: a sine qua non for international data sharing

A. Thorogood, B. M. Knoppers, Global Alliance for Genomics and Health - Regulatory and Ethics Working Group

O33 High throughput screening platform of competent sineups: that can enhance translation activities of therapeutic target

H. Takahashi, K. R. Nitta, A. Kozhuharova, A. M. Suzuki, H. Sharma, D. Cotella, C. Santoro, S. Zucchelli, S. Gustincich, P. Carninci

O34 The undiagnosed diseases network international (UDNI): clinical and laboratory research to meet patient needs

J. J. Mulvihill, G. Baynam, W. Gahl, S. C. Groft, K. Kosaki, P. Lasko, B. Melegh, D. Taruscio

O36 Performance of computational algorithms in pathogenicity predictions for activating variants in oncogenes versus loss of function mutations in tumor suppressor genes

R. Ghosh, S. Plon

O37 Identification and electronic health record incorporation of clinically actionable pharmacogenomic variants using prospective targeted sequencing

S. Scherer, X. Qin, R. Sanghvi, K. Walker, T. Chiang, D. Muzny, L. Wang, J. Black, E. Boerwinkle, R. Weinshilboum, R. Gibbs

O38 Melanoma reprogramming state correlates with response to CTLA-4 blockade in metastatic melanoma

T. Karpinets, T. Calderone, K. Wani, X. Yu, C. Creasy, C. Haymaker, M. Forget, V. Nanda, J. Roszik, J. Wargo, L. Haydu, X. Song, A. Lazar, J. Gershenwald, M. Davies, C. Bernatchez, J. Zhang, A. Futreal, S. Woodman

O39 Data-driven refinement of complex disease classification from integration of heterogeneous functional genomics data in GeneWeaver

E. J. Chesler, T. Reynolds, J. A. Bubier, C. Phillips, M. A. Langston, E. J. Baker

O40 A general statistic framework for genome-based disease risk prediction

M. Xiong, L. Ma, N. Lin, C. Amos

O41 Integrative large-scale causal network analysis of imaging and genomic data and its application in schizophrenia studies

N. Lin, P. Wang, Y. Zhu, J. Zhao, V. Calhoun, M. Xiong

O42 Big data and NGS data analysis: the cloud to the rescue

O. Dobretsberger, M. Egger, F. Leimgruber

O43 Cpipe: a convergent clinical exome pipeline specialised for targeted sequencing

S. Sadedin, A. Oshlack, Melbourne Genomics Health Alliance

O44 A Bayesian classification of biomedical images using feature extraction from deep neural networks implemented on lung cancer data

V. A. A. Antonio, N. Ono, Clark Kendrick C. Go

O45 MAV-SEQ: an interactive platform for the Management, Analysis, and Visualization of sequence data

Z. Ahmed, M. Bolisetty, S. Zeeshan, E. Anguiano, D. Ucar

O47 Allele specific enhancer in EPAS1 intronic regions may contribute to high altitude adaptation of Tibetans

C. Zeng, J. Shao

O48 Nanochannel based next-generation mapping for structural variation detection and comparison in trios and populations

H. Cao, A. Hastie, A. W. Pang, E. T. Lam, T. Liang, K. Pham, M. Saghbini, Z. Dzakula

O49 Archaic introgression in indigenous populations of Malaysia revealed by whole genome sequencing

Y. Chee-Wei, L. Dongsheng, W. Lai-Ping, D. Lian, R. O. Twee Hee, Y. Yunus, F. Aghakhanian, S. S. Mokhtar, C. V. Lok-Yung, J. Bhak, M. Phipps, X. Shuhua, T. Yik-Ying, V. Kumar, H. Boon-Peng

O50 Breast and ovarian cancer prevention: is it time for population-based mutation screening of high risk genes?

I. Campbell, M.-A. Young, P. James, Lifepool

O53 Comprehensive coverage from low DNA input using novel NGS library preparation methods for WGS and WGBS

C. Schumacher, S. Sandhu, T. Harkins, V. Makarov

O54 Methods for large scale construction of robust PCR-free libraries for sequencing on Illumina HiSeqX platform

H. DoddapaneniR. Glenn, Z. Momin, B. Dilrukshi, H. Chao, Q. Meng, B. Gudenkauf, R. Kshitij, J. Jayaseelan, C. Nessner, S. Lee, K. Blankenberg, L. Lewis, J. Hu, Y. Han, H. Dinh, S. Jireh, K. Walker, E. Boerwinkle, D. Muzny, R. Gibbs

O55 Rapid capture methods for clinical sequencing

J. Hu, K. Walker, C. Buhay, X. Liu, Q. Wang, R. Sanghvi, H. Doddapaneni, Y. Ding, N. Veeraraghavan, Y. Yang, E. Boerwinkle, A. L. Beaudet, C. M. Eng, D. M. Muzny, R. A. Gibbs

O56 A diploid personal human genome model for better genomes from diverse sequence data

K. C. C. Worley, Y. Liu, D. S. T. Hughes, S. C. Murali, R. A. Harris, A. C. English, X. Qin, O. A. Hampton, P. Larsen, C. Beck, Y. Han, M. Wang, H. Doddapaneni, C. L. Kovar, W. J. Salerno, A. Yoder, S. Richards, J. Rogers, J. R. Lupski, D. M. Muzny, R. A. Gibbs

O57 Development of PacBio long range capture for detection of pathogenic structural variants

Q. Meng, M. Bainbridge, M. Wang, H. Doddapaneni, Y. Han, D. Muzny, R. Gibbs

O58 Rhesus macaques exhibit more non-synonymous variation but greater impact of purifying selection than humans

R. A. Harris, M. Raveenedran, C. Xue, M. Dahdouli, L. Cox, G. Fan, B. Ferguson, J. Hovarth, Z. Johnson, S. Kanthaswamy, M. Kubisch, M. Platt, D. Smith, E. Vallender, R. Wiseman, X. Liu, J. Below, D. Muzny, R. Gibbs, F. Yu, J. Rogers

O59 Assessing RNA structure disruption induced by single-nucleotide variation

J. Lin, Y. Zhang, Z. Ouyang

P1 A meta-analysis of genome-wide association studies of mitochondrial dna copy number

A. Moore, Z. Wang, J. Hofmann, M. Purdue, R. Stolzenberg-Solomon, S. Weinstein, D. Albanes, C.-S. Liu, W.-L. Cheng, T.-T. Lin, Q. Lan, N. Rothman, S. Berndt

P2 Missense polymorphic genetic combinations underlying down syndrome susceptibility

E. S. Chen

P4 The evaluation of alteration of ELAM-1 expression in the endometriosis patients

H. Bahrami, A. Khoshzaban, S. Heidari Keshal

P5 Obesity and the incidence of apolipoprotein E polymorphisms in an assorted population from Saudi Arabia population

K. K. R. Alharbi

P6 Genome-associated personalized antithrombotical therapy for patients with high risk of thrombosis and bleeding

M. Zhalbinova, A. Akilzhanova, S. Rakhimova, M. Bekbosynova, S. Myrzakhmetova

P7 Frequency of Xmn1 polymorphism among sickle cell carrier cases in UAE population

M. Matar

P8 Differentiating inflammatory bowel diseases by using genomic data: dimension of the problem and network organization

N. Mili, R. Molinari, Y. Ma, S. Guerrier

P9 Vulnerability of genetic variants to the risk of autism among Saudi children

N. Elhawary, M. Tayeb, N. Bogari, N. Qotb

P10 Chromatin profiles from ex vivo purified dopaminergic neurons establish a promising model to support studies of neurological function and dysfunction

S. A. McClymont, P. W. Hook, L. A. Goff, A. McCallion

P11 Utilization of a sensitized chemical mutagenesis screen to identify genetic modifiers of retinal dysplasia in homozygous Nr2e3rd7 mice

Y. Kong, J. R. Charette, W. L. Hicks, J. K. Naggert, L. Zhao, P. M. Nishina

P12 Ion torrent next generation sequencing of recessive polycystic kidney disease in Saudi patients

B. M. Edrees, M. Athar, F. A. Al-Allaf, M. M. Taher, W. Khan, A. Bouazzaoui, N. A. Harbi, R. Safar, H. Al-Edressi, A. Anazi, N. Altayeb, M. A. Ahmed, K. Alansary, Z. Abduljaleel

P13 Digital expression profiling of Purkinje neurons and dendrites in different subcellular compartments

A. Kratz, P. Beguin, S. Poulain, M. Kaneko, C. Takahiko, A. Matsunaga, S. Kato, A. M. Suzuki, N. Bertin, T. Lassmann, R. Vigot, P. Carninci, C. Plessy, T. Launey

P14 The evolution of imperfection and imperfection of evolution: the functional and functionless fractions of the human genome

D. Graur

P16 Species-independent identification of known and novel recurrent genomic entities in multiple cancer patients

J. Friis-Nielsen, J. M. Izarzugaza, S. Brunak

P18 Discovery of active gene modules which are densely conserved across multiple cancer types reveal their prognostic power and mutually exclusive mutation patterns

B. S. Soibam

P19 Whole exome sequencing of dysplastic leukoplakia tissue indicates sequential accumulation of somatic mutations from oral precancer to cancer

D. Das, N. Biswas, S. Das, S. Sarkar, A. Maitra, C. Panda, P. Majumder

P21 Epigenetic mechanisms of carcinogensis by hereditary breast cancer genes

J. J. Gruber, N. Jaeger, M. Snyder

P22 RNA direct: a novel RNA enrichment strategy applied to transcripts associated with solid tumors

K. Patel, S. Bowman, T. Davis, D. Kraushaar, A. Emerman, S. Russello, N. Henig, C. Hendrickson

P23 RNA sequencing identifies gene mutations for neuroblastoma

K. Zhang

P24 Participation of SFRP1 in the modulation of TMPRSS2-ERG fusion gene in prostate cancer cell lines

M. Rodriguez-Dorantes, C. D. Cruz-Hernandez, C. D. P. Garcia-Tobilla, S. Solorzano-Rosales

P25 Targeted Methylation Sequencing of Prostate Cancer

N. Jäger, J. Chen, R. Haile, M. Hitchins, J. D. Brooks, M. Snyder

P26 Mutant TPMT alleles in children with acute lymphoblastic leukemia from México City and Yucatán, Mexico

S. Jiménez-Morales, M. Ramírez, J. Nuñez, V. Bekker, Y. Leal, E. Jiménez, A. Medina, A. Hidalgo, J. Mejía

P28 Genetic modifiers of Alström syndrome

J. Naggert, G. B. Collin, K. DeMauro, R. Hanusek, P. M. Nishina

P31 Association of genomic variants with the occurrence of angiotensin-converting-enzyme inhibitor (ACEI)-induced coughing among Filipinos

E. M. Cutiongco De La Paz, R. Sy, J. Nevado, P. Reganit, L. Santos, J. D. Magno, F. E. Punzalan , D. Ona , E. Llanes, R. L. Santos-Cortes , R. Tiongco, J. Aherrera, L. Abrahan, P. Pagauitan-Alan; Philippine Cardiogenomics Study Group

P32 The use of “humanized” mouse models to validate disease association of a de novo GARS variant and to test a novel gene therapy strategy for Charcot-Marie-Tooth disease type 2D

K. H. Morelli, J. S. Domire, N. Pyne, S. Harper, R. Burgess

P34 Molecular regulation of chondrogenic human induced pluripotent stem cells

M. A. Gari, A. Dallol, H. Alsehli, A. Gari, M. Gari, A. Abuzenadah

P35 Molecular profiling of hematologic malignancies: implementation of a variant assessment algorithm for next generation sequencing data analysis and clinical reporting

M. Thomas, M. Sukhai, S. Garg, M. Misyura, T. Zhang, A. Schuh, T. Stockley, S. Kamel-Reid

P36 Accessing genomic evidence for clinical variants at NCBI

S. Sherry, C. Xiao, D. Slotta, K. Rodarmer, M. Feolo, M. Kimelman, G. Godynskiy, C. O’Sullivan, E. Yaschenko

P37 NGS-SWIFT: a cloud-based variant analysis framework using control-accessed sequencing data from DBGAP/SRA

C. Xiao, E. Yaschenko, S. Sherry

P38 Computational assessment of drug induced hepatotoxicity through gene expression profiling

C. Rangel-Escareño, H. Rueda-Zarate

P40 Flowr: robust and efficient pipelines using a simple language-agnostic approach;ultraseq; fast modular pipeline for somatic variation calling using flowr

S. Seth, S. Amin, X. Song, X. Mao, H. Sun, R. G. Verhaak, A. Futreal, J. Zhang

P41 Applying “Big data” technologies to the rapid analysis of heterogenous large cohort data

S. J. Whiite, T. Chiang, A. English, J. Farek, Z. Kahn, W. Salerno, N. Veeraraghavan, E. Boerwinkle, R. Gibbs

P42 FANTOM5 web resource for the large-scale genome-wide transcription start site activity profiles of wide-range of mammalian cells

T. Kasukawa, M. Lizio, J. Harshbarger, S. Hisashi, J. Severin, A. Imad, S. Sahin, T. C. Freeman, K. Baillie, A. Sandelin, P. Carninci, A. R. R. Forrest, H. Kawaji, The FANTOM Consortium

P43 Rapid and scalable typing of structural variants for disease cohorts

W. Salerno, A. English, S. N. Shekar, A. Mangubat, J. Bruestle, E. Boerwinkle, R. A. Gibbs

P44 Polymorphism of glutathione S-transferases and sulphotransferases genes in an Arab population

A. H. Salem, M. Ali, A. Ibrahim, M. Ibrahim

P46 Genetic divergence of CYP3A5*3 pharmacogenomic marker for native and admixed Mexican populations

J. C. Fernandez-Lopez, V. Bonifaz-Peña, C. Rangel-Escareño, A. Hidalgo-Miranda, A. V. Contreras

P47 Whole exome sequence meta-analysis of 13 white blood cell, red blood cell, and platelet traits

L. Polfus, CHARGE and NHLBI Exome Sequence Project Working Groups

P48 Association of adipoq gene with type 2 diabetes and related phenotypes in african american men and women: The jackson heart study

S. Davis, R. Xu, S. Gebeab, P Riestra, A Gaye, R. Khan, J. Wilson, A. Bidulescu

P49 Common variants in casr gene are associated with serum calcium levels in koreans

S. H. Jung, N. Vinayagamoorthy, S. H. Yim, Y. J. Chung

P50 Inference of multiple-wave population admixture by modeling decay of linkage disequilibrium with multiple exponential functions

Y. Zhou, S. Xu

P51 A Bayesian framework for generalized linear mixed models in genome-wide association studies

X. Wang, V. Philip, G. Carter

P52 Targeted sequencing approach for the identification of the genetic causes of hereditary hearing impairment

A. A. Abuzenadah, M. Gari, R. Turki, A. Dallol

P53 Identification of enhancer sequences by ATAC-seq open chromatin profiling

A. Uyar, A. Kaygun, S. Zaman, E. Marquez, J. George, D. Ucar

P54 Direct enrichment for the rapid preparation of targeted NGS libraries

C. L. Hendrickson, A. Emerman, D. Kraushaar, S. Bowman, N. Henig, T. Davis, S. Russello, K. Patel

P56 Performance of the Agilent D5000 and High Sensitivity D5000 ScreenTape assays for the Agilent 4200 Tapestation System

R. Nitsche, L. Prieto-Lafuente

P57 ClinVar: a multi-source archive for variant interpretation

M. Landrum, J. Lee, W. Rubinstein, D. Maglott

P59 Association of functional variants and protein physical interactions of human MUTY homolog linked with familial adenomatous polyposis and colorectal cancer syndrome

Z. Abduljaleel, W. Khan, F. A. Al-Allaf, M. Athar , M. M. Taher, N. Shahzad

P60 Modification of the microbiom constitution in the gut using chicken IgY antibodies resulted in a reduction of acute graft-versus-host disease after experimental bone marrow transplantation

A. Bouazzaoui, E. Huber, A. Dan, F. A. Al-Allaf, W. Herr, G. Sprotte, J. Köstler, A. Hiergeist, A. Gessner, R. Andreesen, E. Holler

P61 Compound heterozygous mutation in the LDLR gene in Saudi patients suffering severe hypercholesterolemia

F. Al-Allaf, A. Alashwal, Z. Abduljaleel, M. Taher, A. Bouazzaoui, H. Abalkhail, A. Al-Allaf, R. Bamardadh, M. Athar

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