Article open access publication

Profiling of long non-coding RNAs identifies LINC00958 and LINC01296 as candidate oncogenes in bladder cancer

Scientific Reports, Springer Nature, ISSN 2045-2322

Volume 7, 1, 2017

DOI:10.1038/s41598-017-00327-0, Dimensions: pub.1084130461, PMC: PMC5428251, PMID: 28341852,

Affiliations

Organisations

  1. (1) Department of Urology, Klinikum rechts der Isar, Technical University Munich, Munich, Germany
  2. (2) Department of Molecular Medicine, Aarhus University Hospital, University of Aarhus, Aarhus, Denmark
  3. (3) Research unit for Molecular Medicine, Department of Clinical Medicine, Aarhus University Hospital, University of Aarhus, Aarhus, Denmark
  4. (4) Aarhus University, grid.7048.b, AU
  5. (5) Department of Urology, Aarhus University Hospital, University of Aarhus, Aarhus, Denmark

Countries

Denmark

Continents

Europe

Description

Aberrant expression of long non-coding RNAs (lncRNAs) has been regarded as a critical component in bladder cancer (BC) and lncRNAs have been associated with BC development and progression although their overall expression and functional significance is still unclear. The aim of our study was to identify novel lncRNAs with a functional role in BC carcinogenesis. RNA-sequencing was used to identify aberrantly expressed lncRNAs in 8 normal and 72 BC samples. We identified 89 lncRNAs that were significantly dys-regulated in BC. Five lncRNAs; LINC00958, LINC01296, LINC00355, LNC-CMC1-1 and LNC-ALX1-2 were selected for further analyses. Silencing of LINC00958 or LINC01296 in vitro reduced both cell viability and migration. Knock-down of LINC00958 also affected invasion and resistance to anoikis. These cellular effects could be linked to direct/indirect regulation of protein coding mRNAs involved in cell death/survival, proliferation and cellular movement. Finally, we showed that LINC00958 binds proteins involved in regulation and initiation of translation and in post-transcriptional modification of RNA, including Metadherin, which has previously been associated with BC. Our analyses identified novel lncRNAs in BC that likely act as oncogenic drivers contributing to an aggressive cancerous phenotype likely through interaction with proteins involved in initiation of translation and/or post-transcriptional modification of RNA.

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Danish Open Access Indicator

2017: Realized

Research area: Medicine

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2017: Level 1

Research area: Medicine

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Times Cited: 55

Field Citation Ratio (FCR): 13

Relative Citation ratio (RCR): 5.19

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