selected publications
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academic article
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Simulated physiological oocyte maturation has side effects on bovine oocytes and embryos.
Journal of Assisted Reproduction and Genetics.
36.
2019
An adult-based insulin resistance genetic risk score associates with insulin resistance, metabolic traits and altered fat distribution in Danish children and adolescents who are overweight or obese.
Diabetologia.
61.
2018
Gene co-expression networks from RNA sequencing of dairy cattle identifies genes and pathways affecting feed efficiency.
BMC Bioinformatics.
19.
2018
Gene co-expression networks in liver and muscle transcriptome reveal sex-specific gene expression in lambs fed with a mix of essential oils.
BMC Genomics.
19.
2018
Genetic Susceptibility for Childhood BMI has no Impact on Weight Loss Following Lifestyle Intervention in Danish Children.
Obesity.
26.
2018
Identification of Expression QTLs Targeting Candidate Genes for Residual Feed Intake in Dairy Cattle Using Systems Genomics.
Journal of Genetics and Genome Research.
5.
2018
Systems genetics analysis of pharmacogenomics variation during antidepressant treatment.
The Pharmacogenomics Journal.
18.
2018
Systems genomics study reveals expression quantitative trait loci, regulator genes and pathways associated with boar taint in pigs.
PLoS ONE.
13.
2018
Transcription Factor Co-expression Networks of Adipose RNA-Seq Data Reveal Regulatory Mechanisms of Obesity..
Current Genomics.
19.
2018
WISH-R– a fast and efficient tool for construction of epistatic networks for complex traits and diseases.
BMC Bioinformatics.
19.
2018
A genome-wide association study of thyroid stimulating hormone and free thyroxine in Danish children and adolescents.
PLoS ONE.
12.
2017
Application of integrative genomics and systems biology to conventional and in vitro reproductive traits in cattle.
Animal Reproduction.
14.
2017
Basic and practical aspects of pregnancy establishment in cattle.
Animal Reproduction.
14.
2017
Differential expression and co-expression gene networks reveal candidate biomarkers of boar taint in non-castrated pigs.
Scientific Reports.
7.
2017
Genomic study and Medical Subject Headings enrichment analysis of early pregnancy rate and antral follicle numbers in Nelore heifers,.
Journal of Animal Science.
95.
2017
Identification of potential biomarkers in donor cows for in vitro embryo production by granulosa cell transcriptomics.
PLoS ONE.
12.
2017
In vitro production of bovine embryos: cumulus/granulosa cell gene expression patterns point to early atresia as beneficial for oocyte competence.
Animal Reproduction.
14.
2017
RNA-Seq transcriptomics and pathway analyses reveal potential regulatory genes and molecular mechanisms in high- and low-residual feed intake in Nordic dairy cattle.
BMC Genomics.
18.
2017
Single nucleotide polymorphism discovery in bovine liver using RNA-seq technology.
PLoS ONE.
12.
2017
Systematic in vitro and in vivo characterization of Leukemia‐inhibiting factor‐ and Fibroblast growth factor‐derived porcine induced pluripotent stem cells.
Molecular Reproduction and Development.
84.
2017
192 PREMATURATION OF BOVINE CUMULUS-OOCYTE COMPLEXES WITH CYCLIC ADENOSINE MONOPHOSPHATE MODULATORS AFFECTS BOTH OOCYTE AND BLASTOCYST ULTRASTRUCTURE.
Reproduction Fertility and Development.
28.
2016
Copy number variations and genome-wide associations reveal putative genes and metabolic pathways involved with the feed conversion ratio in beef cattle.
Journal of Applied Genetics.
57.
2016
Erratum to: Liver transcriptomic networks reveal main biological processes associated with feed efficiency in beef cattle.
BMC Genomics.
17.
2016
Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.
Human Molecular Genetics.
25.
2016
Genome-wide associations for birth weight and correlations with adult disease.
Nature.
538.
2016
Inter-Tissue Gene Co-Expression Networks between Metabolically Healthy and Unhealthy Obese Individuals.
PLoS ONE.
11.
2016
Multi-omic data integration and analysis using systems genomics approaches: methods and applications in animal production, health and welfare.
Genetics Selection Evolution.
48.
2016
Single Nucleotide Polymorphism Discovery in Bovine Pituitary Gland Using RNA-Seq Technology.
PLoS ONE.
11.
2016
Systems genetics and genome-wide association approaches for analysis of feed intake, feed efficiency, and performance in beef cattle.
Genetics and Molecular Research.
15.
2016
Additive and epistatic genome‐wide association for growth and ultrasound scan measures of carcass‐related traits in Brahman cattle.
Journal of Animal Breeding and Genetics.
132.
2015
An integrative systems genetics approach reveals potential causal genes and pathways related to obesity.
Genome Medicine.
7.
2015
Comparative Analyses of QTLs Influencing Obesity and Metabolic Phenotypes in Pigs and Humans.
PLoS ONE.
10.
2015
Late gestation under‐ and overnutrition have differential impacts when combined with a post‐natal obesogenic diet on glucose–lactate–insulin adaptations during metabolic challenges in adolescent sheep.
Acta Physiologica.
213.
2015
Liver transcriptomic networks reveal main biological processes associated with feed efficiency in beef cattle.
BMC Genomics.
16.
2015
Potential role of lncRNA cyp2c91–protein interactions on diseases of the immune system.
Frontiers in Genetics.
6.
2015
SNP annotation-based whole genomic prediction and selection: An application to feed efficiency and its component traits in pigs.
Journal of Animal Science.
93.
2015
Systems Genetics of Complex Diseases Using RNA-Sequencing Methods.
International Journal of Bioscience Biochemistry and Bioinformatics.
5.
2015
Expression studies of six human obesity‐related genes in seven tissues from divergent pig breeds.
Animal Genetics.
45.
2014
Genome-wide association and pathway analysis of feed efficiency in pigs reveal candidate genes and pathways for residual feed intake.
Frontiers in Genetics.
5.
2014
Genome-wide association and systems genetic analyses of residual feed intake, daily feed consumption, backfat and weight gain in pigs.
BMC Genetics.
15.
2014
Genomics to systems biology in animal and veterinary sciences: Progress, lessons and opportunities.
Livestock Science.
166.
2014
Identification of co-expression gene networks, regulatory genes and pathways for obesity based on adipose tissue RNA Sequencing in a porcine model.
BMC Medical Genomics.
7.
2014
Molecular genetic diversity and genetic structure of Vietnamese indigenous pig populations.
Journal of Animal Breeding and Genetics.
131.
2014
Systems genetics of obesity in an F2 pig model by genome-wide association, genetic network, and pathway analyses.
Frontiers in Genetics.
5.
2014
Weighted Interaction SNP Hub (WISH) network method for building genetic networks for complex diseases and traits using whole genome genotype data.
BMC Systems Biology.
8.
2014
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chapter
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dataset
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Data_Sheet_1_An Epigenome-Wide DNA Methylation Map of Testis in Pigs for Study of Complex Traits.xlsx.
frontiers.
2019
Data_Sheet_2_An Epigenome-Wide DNA Methylation Map of Testis in Pigs for Study of Complex Traits.xlsx.
frontiers.
2019
Data_Sheet_3_An Epigenome-Wide DNA Methylation Map of Testis in Pigs for Study of Complex Traits.docx.
frontiers.
2019
Table_1_Detection of Co-expressed Pathway Modules Associated With Mineral Concentration and Meat Quality in Nelore Cattle.XLSX.
frontiers.
2019
Table_2_Detection of Co-expressed Pathway Modules Associated With Mineral Concentration and Meat Quality in Nelore Cattle.XLSX.
frontiers.
2019
Table_3_Detection of Co-expressed Pathway Modules Associated With Mineral Concentration and Meat Quality in Nelore Cattle.XLSX.
frontiers.
2019
Table_4_Detection of Co-expressed Pathway Modules Associated With Mineral Concentration and Meat Quality in Nelore Cattle.XLSX.
frontiers.
2019
Table_5_Detection of Co-expressed Pathway Modules Associated With Mineral Concentration and Meat Quality in Nelore Cattle.XLSX.
frontiers.
2019
Table_6_Detection of Co-expressed Pathway Modules Associated With Mineral Concentration and Meat Quality in Nelore Cattle.XLSX.
frontiers.
2019
Additional file 1: of Gene co-expression networks in liver and muscle transcriptome reveal sex-specific gene expression in lambs fed with a mix of essential oils.
springer-nature.
2018
Additional file 2: of Gene co-expression networks in liver and muscle transcriptome reveal sex-specific gene expression in lambs fed with a mix of essential oils.
springer-nature.
2018
Additional file 3: of Gene co-expression networks in liver and muscle transcriptome reveal sex-specific gene expression in lambs fed with a mix of essential oils.
springer-nature.
2018
Additional file 4: of Gene co-expression networks in liver and muscle transcriptome reveal sex-specific gene expression in lambs fed with a mix of essential oils.
springer-nature.
2018
Additional file 5: of Gene co-expression networks in liver and muscle transcriptome reveal sex-specific gene expression in lambs fed with a mix of essential oils.
springer-nature.
2018
Additional file 6: of Gene co-expression networks in liver and muscle transcriptome reveal sex-specific gene expression in lambs fed with a mix of essential oils.
springer-nature.
2018
Additional file 7: of Gene co-expression networks in liver and muscle transcriptome reveal sex-specific gene expression in lambs fed with a mix of essential oils.
springer-nature.
2018
Candidate cis-acting eQTLs for gene-based selection..
public-library-of-science.
2018
Filtered multi-tissue eQTLs from liver and testis..
public-library-of-science.
2018
Summary of categories from the enriched QTL traits..
public-library-of-science.
2018
Systems genomics study reveals expression quantitative trait loci, regulator genes and pathways associated with boar taint in pigs.
public-library-of-science.
2018
Top 30 cis-acting filtered eQTLs in porcine liver..
public-library-of-science.
2018
Top 30 cis-acting filtered eQTLs in porcine testis..
public-library-of-science.
2018
Top 30 enriched QTL traits from the filtered cis-acting eQTLs of liver and testis..
public-library-of-science.
2018
A genome-wide association study of thyroid stimulating hormone and free thyroxine in Danish children and adolescents.
public-library-of-science.
2017
Comparison of FCs of significant associated genes with expression changes identified between healthy and small atretic follicles..
public-library-of-science.
2017
Comparison of FCs of significant genes with expression changes identified between small and medium or large antral follicles..
public-library-of-science.
2017
Construction of breed-specific raw SNP-db of bovine liver transcriptome..
public-library-of-science.
2017
Description of submitted FASTQ sequences of bovine liver of all 18 young bulls from three cattle breeds using RNA-seq..
public-library-of-science.
2017
Identification of potential biomarkers in donor cows for in vitro embryo production by granulosa cell transcriptomics.
public-library-of-science.
2017
Lead SNPs from the discovery-, replication- and meta-analyses..
public-library-of-science.
2017
Molecular and cellular functions enriched in IPA®..
public-library-of-science.
2017
SNP mutations and primer sequences of selected SNPs originating from the bovine liver RNA-seq experiment..
public-library-of-science.
2017
Significant enriched KEGG pathways (FDR <5%) identified from GSEA for all the IVP scores analysed..
public-library-of-science.
2017
Single nucleotide polymorphism discovery in bovine liver using RNA-seq technology.
public-library-of-science.
2017
Summary of the Fold Change (FC) and the corresponding FDR for the genes in common among all the IVP scores..
public-library-of-science.
2017
Summary of the IVP scores for the sample sets..
public-library-of-science.
2017
The distribution (n) of investigating young bulls in a breed-specific experimental design representing bovine liver transcriptome..
public-library-of-science.
2017
Transcriptome mapping profile of liver tissue from the Hereford cattle breed aligned to bovine reference UMD3.1 genome assembly..
public-library-of-science.
2017
Transcriptome mapping profile of liver tissue from the Polish HF cattle breed aligned to bovine reference UMD3.1 genome assembly..
public-library-of-science.
2017
Transcriptome mapping profile of liver tissue from the Polish Red cattle breed aligned to bovine reference UMD3.1 genome assembly..
public-library-of-science.
2017
Correlation of IL-6 mRNA expression between liver and adipose tissues in different groups of subjects, with p-values representing the significance of across-tissue correlation..
public-library-of-science.
2016
Correlation of IL1B mRNA expression between liver and adipose tissues in different groups of subjects, with p-values representing the significance of across-tissue correlation..
public-library-of-science.
2016
Descriptive statistics with mean and standard deviation of the individuals..
public-library-of-science.
2016
Review of literature on global tissue-specific bovine RNA-seq experiments based on SNP discoveries..
public-library-of-science.
2016
SNP-ID and primer sequences of selected breed-specific SNPs of Polish HF cattle..
public-library-of-science.
2016
Single Nucleotide Polymorphism Discovery in Bovine Pituitary Gland Using RNA-Seq Technology.
public-library-of-science.
2016
The distribution (n) of investigating young bulls in a breed-specific experimental design representing bovine pituitary gland transcriptome..
public-library-of-science.
2016
Transcriptome mapping of pituitary gland in Hereford breed to bovine reference UMD3.1 genome assembly..
public-library-of-science.
2016
Transcriptome mapping of pituitary gland in Polish HF breed to bovine reference UMD3.1 genome assembly..
public-library-of-science.
2016
Transcriptome mapping of pituitary gland in Polish Red breed to bovine reference UMD3.1 genome assembly..
public-library-of-science.
2016
Additional file 1: of An integrative systems genetics approach reveals potential causal genes and pathways related to obesity.
springer-nature.
2015
Additional file 2: of An integrative systems genetics approach reveals potential causal genes and pathways related to obesity.
springer-nature.
2015
Chromosomal positions associated with multiple phenotypes in the pig resource population..
public-library-of-science.
2015
Comparative Analyses of QTLs Influencing Obesity and Metabolic Phenotypes in Pigs and Humans.
public-library-of-science.
2015
Description of phenotypes measured in pigs at different ages, and covariates used in the statistical model for association analyses..
public-library-of-science.
2015
Porcine QTLs with overlapping QTLs for related phenotypes in the NHGRI GWAS catalog..
public-library-of-science.
2015
UNIK_Porcine_FinalReport.
dryad.
2015
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hide from search
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Table_1_Genome-Wide Epistatic Interaction Networks Affecting Feed Efficiency in Duroc and Landrace Pigs.xlsx.
frontiers.
2020
Table_2_Genome-Wide Epistatic Interaction Networks Affecting Feed Efficiency in Duroc and Landrace Pigs.xlsx.
frontiers.
2020
Table_3_Genome-Wide Epistatic Interaction Networks Affecting Feed Efficiency in Duroc and Landrace Pigs.xlsx.
frontiers.
2020
Comparative mapping of tag SNPs with previous QTLs reported in pig QTL database (Release 19, on Dec 27, 2012) and previous GWAS results..
public-library-of-science.
2013
Descriptive statistics (mean ± SD), reliability of Evaluated Breeding Value (EBV) for measured traits in Duroc boars..
public-library-of-science.
2013
Functional annotation of nearby genes based on protein information and biological process..
public-library-of-science.
2013
Genome-Wide Association Study Reveals Genetic Architecture of Eating Behavior in Pigs and Its Implications for Humans Obesity by Comparative Mapping.
public-library-of-science.
2013
Haplotypes and their frequencies in the candidate region for total daily feed intake on chromosome 1..
public-library-of-science.
2013
Pre- and Early-Postnatal Nutrition Modify Gene and Protein Expressions of Muscle Energy Metabolism Markers and Phospholipid Fatty Acid Composition in a Muscle Type Specific Manner in Sheep.
public-library-of-science.
2013
References and efficiencies of the primer sequences that were used for qPCR..
public-library-of-science.
2013
Significant SNP associated to studied eating behavioral traits, their positions and nearest genes and distance from SNPs to corresponding genes..
public-library-of-science.
2013
Total triglyceride (TG) and ceramide (Cer) contents in muscles of 6-months old lambs..
public-library-of-science.
2013
An F2 Pig Resource Population as a Model for Genetic Studies of Obesity and Obesity-Related Diseases in Humans: Design and Genetic Parameters.
Frontiers in Genetics.
2013
Assessment of genetic diversity and population structure of Vietnamese indigenous cattle populations by microsatellites.
Livestock Science.
2013
Association between microsatellite markers and bovine tuberculosis in Chadian Zebu cattle.
Open Journal of Animal Sciences.
2013
Genetic parameters for androstenone and skatole as indicators of boar taint and their relationship to production and litter size traits in Danish Landrace.
Journal of Animal Science.
2013
Genetic parameters for different measures of feed efficiency and related traits in boars of three pig breeds.
Journal of Animal Science.
2013
Genetic parameters for male fertility and its relationship to skatole and androstenone in Danish Landrace boars.
Journal of Animal Science.
2013
Genome-Wide Association Study Reveals Genetic Architecture of Eating Behavior in Pigs and Its Implications for Humans Obesity by Comparative Mapping.
PLoS ONE.
2013
Pre- and Early-Postnatal Nutrition Modify Gene and Protein Expressions of Muscle Energy Metabolism Markers and Phospholipid Fatty Acid Composition in a Muscle Type Specific Manner in Sheep.
PLoS ONE.
2013