selected publications
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academic article
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An NAD+-Dependent Sirtuin Depropionylase and Deacetylase (Sir2La) from the Probiotic Bacterium Lactobacillus acidophilus NCFM..
Biochemistry.
57.
2018
Dietary Nutrients, Proteomes, and Adhesion of Probiotic Lactobacilli to Mucin and Host Epithelial Cells.
Microorganisms.
6.
2018
Effect of alginate size, mannuronic/guluronic acid content and pH on particle size, thermodynamics and composition of complexes with β-lactoglobulin.
Food Hydrocolloids.
75.
2018
Functional Roles of Starch Binding Domains and Surface Binding Sites in Enzymes Involved in Starch Biosynthesis.
Frontiers in Plant Science.
9.
2018
Interaction between structurally different heteroexopolysaccharides and β-lactoglobulin studied by solution scattering and analytical ultracentrifugation.
International Journal of Biological Macromolecules.
111.
2018
Isoenergic modification of whey protein structure by denaturation and crosslinking using transglutaminase.
Food & Function.
9.
2018
Mass-Spectrometry-Based Identification of Cross-Links in Proteins Exposed to Photo-Oxidation and Peroxyl Radicals Using 18O Labeling and Optimized Tandem Mass Spectrometry Fragmentation..
Journal of Proteome Research.
17.
2018
New Insights into the Potential of Endogenous Redox Systems in Wheat Bread Dough.
Antioxidants.
7.
2018
Plant Polyphenols Stimulate Adhesion to Intestinal Mucosa and Induce Proteome Changes in the Probiotic Lactobacillus acidophilus NCFM.
Molecular Nutrition & Food Research.
62.
2018
Plasma membrane proteome analysis identifies a role of barley membrane steroid binding protein in root architecture response to salinity.
Plant Cell & Environment.
41.
2018
Revealing the Dimeric Crystal and Solution Structure of β-Lactoglobulin at pH 4 and Its pH and Salt Dependent Monomer-Dimer Equilibrium..
Biomacromolecules.
19.
2018
A meta-proteomics approach to study the interspecies interactions affecting microbial biofilm development in a model community.
Scientific Reports.
7.
2017
An Extracellular Cell-Attached Pullulanase Confers Branched α-Glucan Utilization in Human Gut Lactobacillus acidophilus.
Applied and Environmental Microbiology.
83.
2017
Comparative proteomics of oxidative stress response of Lactobacillus acidophilus NCFM reveals effects on DNA repair and cysteine de novo synthesis.
Proteomics.
17.
2017
Data regarding the growth of Lactobacillus acidophilus NCFM on different carbohydrates and recombinant production of elongation factor G and pyruvate kinase.
Data in Brief.
14.
2017
Development of novel monoclonal antibodies against starch and ulvan - implications for antibody production against polysaccharides with limited immunogenicity.
Scientific Reports.
7.
2017
Discovery of α-l-arabinopyranosidases from human gut microbiome expands the diversity within glycoside hydrolase family 42.
Journal of Biological Chemistry.
292.
2017
Effect of repeat unit structure and molecular mass of lactic acid bacteria hetero-exopolysaccharides on binding to milk proteins.
Carbohydrate Polymers.
177.
2017
Exo‐ and surface proteomes of the probiotic bacterium Lactobacillus acidophilus NCFM.
Proteomics.
17.
2017
Functional and structural characterization of plastidic starch phosphorylase during barley endosperm development.
PLoS ONE.
12.
2017
GH62 arabinofuranosidases: Structure, function and applications.
Biotechnology Advances.
35.
2017
Investigation of the indigenous fungal community populating barley grains: Secretomes and xylanolytic potential.
Journal of Proteomics.
169.
2017
Mucin- and carbohydrate-stimulated adhesion and subproteome changes of the probiotic bacterium Lactobacillus acidophilus NCFM.
Journal of Proteomics.
163.
2017
Revealing the Compact Structure of Lactic Acid Bacterial Heteroexopolysaccharides by SAXS and DLS..
Biomacromolecules.
18.
2017
The Reducing Capacity of Thioredoxin on Oxidized Thiols in Boiled Wort..
Journal of Agricultural and Food Chemistry.
65.
2017
The starch‐binding domain family CBM41—An in silico analysis of evolutionary relationships.
Proteins Structure Function and Bioinformatics.
85.
2017
The structure of Lactococcus lactis thioredoxin reductase reveals molecular features of photo-oxidative damage.
Scientific Reports.
7.
2017
Unrestricted Mass Spectrometric Data Analysis for Identification, Localization, and Quantification of Oxidative Protein Modifications..
Journal of Proteome Research.
16.
2017
Amylolytic glycoside hydrolases.
Cellular and Molecular Life Sciences.
73.
2016
An ATP Binding Cassette Transporter Mediates the Uptake of α-(1,6)-Linked Dietary Oligosaccharides in Bifidobacterium and Correlates with Competitive Growth on These Substrates.
Journal of Biological Chemistry.
291.
2016
An efficient arabinoxylan-debranching α-l-arabinofuranosidase of family GH62 from Aspergillus nidulans contains a secondary carbohydrate binding site.
Applied Microbiology and Biotechnology.
100.
2016
Barley germination: Spatio-temporal considerations for designing and interpreting ‘omics’ experiments.
Journal of Cereal Science.
70.
2016
Differential proteome and cellular adhesion analyses of the probiotic bacterium Lactobacillus acidophilus NCFM grown on raffinose – an emerging prebiotic.
Proteomics.
16.
2016
Exploring the Plant-Microbe Interface by Profiling the Surface-Associated Proteins of Barley Grains..
Journal of Proteome Research.
15.
2016
Iminosugar inhibitors of carbohydrate-active enzymes that underpin cereal grain germination and endosperm metabolism.
Biochemical Society Transactions.
44.
2016
Lytic polysaccharide monooxygenases and other oxidative enzymes are abundantly secreted by Aspergillus nidulans grown on different starches.
Biotechnology for Biofuels.
9.
2016
Plant α‐glucan phosphatases SEX4 and LSF2 display different affinity for amylopectin and amylose.
FEBS Letters.
590.
2016
Seed thioredoxin h.
Biochimica et Biophysica Acta (BBA) - Lipids and Lipid Metabolism.
1864.
2016
Structural and Mechanical Properties of Thin Films of Bovine Submaxillary Mucin versus Porcine Gastric Mucin on a Hydrophobic Surface in Aqueous Solutions..
Langmuir.
32.
2016
Structural biology of starch-degrading enzymes and their regulation.
Current Opinion in Structural Biology.
40.
2016
Structure and function of α-glucan debranching enzymes.
Cellular and Molecular Life Sciences.
73.
2016
Using Carbohydrate Interaction Assays to Reveal Novel Binding Sites in Carbohydrate Active Enzymes.
PLoS ONE.
11.
2016
A Simplified Chromatographic Approach to Purify Commercially Available Bovine Submaxillary Mucins (BSM).
Preparative Biochemistry & Biotechnology.
45.
2015
A redox-dependent dimerization switch regulates activity and tolerance for reactive oxygen species of barley seed glutathione peroxidase.
Plant Physiology and Biochemistry.
90.
2015
Analysis of Surface Binding Sites (SBS) within GH62, GH13 and GH77.
Journal of Applied Glycoscience.
62.
2015
Complementing DIGE proteomics and DNA subarray analyses to shed light on Oenococcus oeni adaptation to ethanol in wine-simulated conditions.
Journal of Proteomics.
123.
2015
Crystal Structure of Barley Limit Dextrinase-Limit Dextrinase Inhibitor (LD-LDI) Complex Reveals Insights into Mechanism and Diversity of Cereal Type Inhibitors.
Journal of Biological Chemistry.
290.
2015
Defining Starch Binding by Glucan Phosphatases.
The FASEB Journal.
29.
2015
Lactococcus lactis thioredoxin reductase is sensitive to light inactivation..
Biochemistry.
54.
2015
Levels of circulating MMP-7 degraded elastin are elevated in pulmonary disorders.
Clinical Biochemistry.
48.
2015
Oligosaccharide and Substrate Binding in the Starch Debranching Enzyme Barley Limit Dextrinase.
Journal of Molecular Biology.
427.
2015
Proteolytic Degradation of Bovine Submaxillary Mucin (BSM) and Its Impact on Adsorption and Lubrication at a Hydrophobic Surface..
Langmuir.
31.
2015
Serological assessment of neutrophil elastase activity on elastin during lung ECM remodeling.
BMC Pulmonary Medicine.
15.
2015
Surface binding sites in amylase have distinct roles in recognition of starch structure motifs and degradation.
International Journal of Biological Macromolecules.
75.
2015
Ten years of subproteome investigations in lactic acid bacteria: A key for food starter and probiotic typing.
Journal of Proteomics.
127.
2015
The Differential Proteome of the Probiotic Lactobacillus acidophilus NCFM Grown on the Potential Prebiotic Cellobiose Shows Upregulation of Two β-Glycoside Hydrolases.
BioMed Research International.
2015.
2015
The GH5 1,4-β-mannanase from Bifidobacterium animalis subsp. lactis Bl-04 possesses a low-affinity mannan-binding module and highlights the diversity of mannanolytic enzymes.
BMC Biochemistry.
16.
2015
Two Lactococcus lactis thioredoxin paralogues play different roles in responses to arsenate and oxidative stress.
Microbiology.
161.
2015
A novel twist on molecular interactions between thioredoxin and nicotinamide adenine dinucleotide phosphate‐dependent thioredoxin reductase.
Proteins Structure Function and Bioinformatics.
82.
2014
Analysis of surface binding sites (SBSs) in carbohydrate active enzymes with focus on glycoside hydrolase families 13 and 77 — a mini-review.
Biologia.
69.
2014
Distinct substrate specificities of three glycoside hydrolase family 42 β-galactosidases from Bifidobacterium longum subsp. infantis ATCC 15697.
Glycobiology.
24.
2014
Gibberellic Acid-Induced Aleurone Layers Responding to Heat Shock or Tunicamycin Provide Insight into the N-Glycoproteome, Protein Secretion, and Endoplasmic Reticulum Stress.
Plant Physiology.
164.
2014
Glycopeptide enrichment using a combination of ZIC-HILIC and cotton wool for exploring the glycoproteome of wheat flour albumins..
Journal of Proteome Research.
13.
2014
Lactococcus lactis TrxD represents a subgroup of thioredoxins prevalent in Gram-positive bacteria containing WCXDC active site motifs.
Archives of Biochemistry and Biophysics.
564.
2014
O4‐10‐06: DETECTION OF A CASPASE‐3 CLEAVED TAU FRAGMENT IN THE SERUM OF ALZHEIMER'S PATIENTS BY USING IMMUNOPRECIPITATION AND LC‐MS/MS.
Alzheimer's & Dementia.
10.
2014
Recent insight in α-glucan metabolism in probiotic bacteria.
Biologia.
69.
2014
S2-5 Analysis of Surface Binding Sites (SBS) within GH62, GH13 and GH77(Recent Progress of Carbohydrate Bioengineering).
Bulletin of Applied Glycoscience.
4.
2014
Selectivity of the surface binding site (SBS) on barley starch synthase I.
Biologia.
69.
2014
Synbiotic Lactobacillus acidophilus NCFM and cellobiose does not affect human gut bacterial diversity but increases abundance of lactobacilli, bifidobacteria and branched‐chain fatty acids: a randomized, double‐blinded cross‐over trial.
FEMS Microbiology Ecology.
90.
2014
The Role of Extracellular Matrix Quality in Pulmonary Fibrosis.
Respiration.
88.
2014
α-Amylase: an enzyme specificity found in various families of glycoside hydrolases.
Cellular and Molecular Life Sciences.
71.
2014
β‐Galactoside catabolism within Bifidobacterium.
Molecular Microbiology.
94.
2014
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chapter
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High-Throughput In Vitro Screening for Inhibitors of Cereal α-Glucosidase.
Springer Nature.
2018
Affinity Electrophoresis for Analysis of Catalytic Module-Carbohydrate Interactions.
Springer Nature.
2017
Chapter 6 Barley Grain Proteins.
Elsevier.
2014
Identification of Thioredoxin Target Disulfides Using Isotope-Coded Affinity Tags.
Springer Nature.
2014
Prebiotic Enhancement of Probiotic Potential.
Taylor & Francis.
2014
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conference paper
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dataset
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Data collection and refinement statistics..
public-library-of-science.
2017
Functional and structural characterization of plastidic starch phosphorylase during barley endosperm development.
public-library-of-science.
2017
Affinity electrophoresis regimes..
public-library-of-science.
2016
Binding affinities and stoichiometries for family GH13 enzymes and cellulases as determined by surface plasmon resonance..
public-library-of-science.
2016
Exploring the
Plant–Microbe Interface by Profiling
the Surface-Associated Proteins of Barley Grains.
american-chemical-society.
2016
MOESM1 of Lytic polysaccharide monooxygenases and other oxidative enzymes are abundantly secreted by Aspergillus nidulans grown on different starches.
springer-nature.
2016
Origins and binding properties of enzymes in this study..
public-library-of-science.
2016
Properties of polysaccharides used in this study..
public-library-of-science.
2016
Using Carbohydrate Interaction Assays to Reveal Novel Binding Sites in Carbohydrate Active Enzymes.
public-library-of-science.
2016
Glycopeptide Enrichment Using
a Combination of ZIC-HILIC
and Cotton Wool for Exploring the Glycoproteome of Wheat Flour Albumins.
american-chemical-society.
2014
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hide from search
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Community-intrinsic properties enhance keratin degradation from bacterial consortia.
public-library-of-science.
2020
Secreted proteins with significant changes in abundance between mono- and co-cultures after FDR correction..
public-library-of-science.
2020
Protein identifications of differentially abundant spots..
public-library-of-science.
2013
Proteome Regulation during Olea europaea Fruit Development.
public-library-of-science.
2013
A Bacterial Glucanotransferase Can Replace the Complex Maltose Metabolism Required for Starch to Sucrose Conversion in Leaves at Night.
Journal of Biological Chemistry.
2013
A Snapshot into the Metabolism of Isomalto-oligosaccharides in Probiotic Bacteria.
Journal of Applied Glycoscience.
2013
An exoproteome approach to monitor safety of a cheese-isolated Lactococcus lactis.
Food Research International.
2013
Application of proteomics for improving crop protection/artificial regulation.
Frontiers in Plant Science.
2013
Arabidopsis thaliana AMY3 Is a Unique Redox-regulated Chloroplastic α-Amylase.
Journal of Biological Chemistry.
2013
Biochemical and kinetic characterisation of a novel xylooligosaccharide-upregulated GH43 β-d-xylosidase/α-l-arabinofuranosidase (BXA43) from the probiotic Bifidobacterium animalis subsp. lactis BB-12.
AMB Express.
2013
Comparative fermentation of insoluble carbohydrates in an in vitro human feces model spiked with Lactobacillus acidophilus NCFM.
Starch - Stärke.
2013
Fusarium graminearum and Its Interactions with Cereal Heads: Studies in the Proteomics Era.
Frontiers in Plant Science.
2013
In vitro growth of four individual human gut bacteria on oligosaccharides produced by chemoenzymatic synthesis.
Food & Function.
2013
Key aromatic residues at subsites +2 and +3 of glycoside hydrolase family 31 α-glucosidase contribute to recognition of long-chain substrates.
Biochimica et Biophysica Acta (BBA) - Lipids and Lipid Metabolism.
2013
Kinetic analysis of inhibition of glucoamylase and active site mutants via chemoselective oxime immobilization of acarbose on SPR chip surfaces.
Carbohydrate Research.
2013
Proteome Regulation during Olea europaea Fruit Development.
PLoS ONE.
2013
Recent development of phosphorylases possessing large potential for oligosaccharide synthesis.
Current Opinion in Chemical Biology.
2013
Recent insight into oligosaccharide uptake and metabolism in probiotic bacteria.
Biocatalysis and Biotransformation.
2013
Structural basis for arabinoxylo‐oligosaccharide capture by the probiotic Bifidobacterium animalis subsp. lactis Bl‐04.
Molecular Microbiology.
2013
Surface Binding Sites (SBSs), Mechanism and Regulation of Enzymes Degrading Amylopectin and α-Limit Dextrins.
Journal of Applied Glycoscience.
2013
Surface binding sites in carbohydrate active enzymes: an emerging picture of structural and functional diversity
2013
The barley grain thioredoxin system – an update.
Frontiers in Plant Science.
2013
Transcriptional analysis of oligosaccharide utilization by Bifidobacterium lactisBl-04.
BMC Genomics.
2013
Lactobacillus acidophilus NCFM and Bifidobacterium animalis subsp. lactis Bl-04 numbers (log10 bacteria/mL ± SE) detected by quantitative PCR for colonic fermentations with A) NCFM and carbohydrates stated and B) Bl-04 and carbohydrates stated (n = 2 for all except Bl-04 and maltotriose and control fermentations where n = 3)..
public-library-of-science.
2012
List of carbohydrates used in this study..
public-library-of-science.
2012
Primers, mastermixes, standard al strains and annealing temperatures used in quantitative PCR detection of target bacteria..
public-library-of-science.
2012
Statistically significant upregulated genes involved in carbohydrate uptake and catabolism..
public-library-of-science.
2012
Strains and plasmids used in the study..
public-library-of-science.
2012
The Effect of Selected Synbiotics on Microbial Composition and Short-Chain Fatty Acid Production in a Model System of the Human Colon.
public-library-of-science.
2012
Transcriptional Analysis of Prebiotic Uptake and Catabolism by Lactobacillus acidophilus NCFM.
public-library-of-science.
2012
Identification of Thioredoxin Disulfide Targets Using a Quantitative Proteomics Approach Based on Isotope-Coded Affinity Tags.
american-chemical-society.
2008
Identification of Thioredoxin Disulfide Targets Using a Quantitative Proteomics Approach Based on Isotope-Coded Affinity Tags.
american-chemical-society.
2008