selected publications
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academic article
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A Sporadic Four-Year Hospital Outbreak of a ST97-IVa MRSA With Half of the Patients First Identified in the Community.
Frontiers in Microbiology.
09.
2018
Analytical performance of the Hologic Aptima HBV Quant Assay and the COBAS Ampliprep/COBAS TaqMan HBV test v2.0 for the quantification of HBV DNA in plasma samples.
Journal of Clinical Virology.
104.
2018
Clinical and analytical evaluation of the new Aptima Mycoplasma genitalium assay, with data on M. genitalium prevalence and antimicrobial resistance in M. genitalium in Denmark, Norway and Sweden in 2016.
Clinical Microbiology and Infection.
24.
2018
Emergence of a vancomycin-variable Enterococcus faecium ST1421 strain containing a deletion in vanX..
Journal of Antimicrobial Chemotherapy.
73.
2018
European external quality assessments for identification, molecular typing and characterization of Staphylococcus aureus..
Journal of Antimicrobial Chemotherapy.
73.
2018
Evolution of the β-lactam-resistant Streptococcus pneumoniae PMEN3 clone over a 30 year period in Barcelona, Spain..
Journal of Antimicrobial Chemotherapy.
73.
2018
Genomics-Based Identification of Microorganisms in Human Ocular Body Fluid.
Scientific Reports.
8.
2018
Identification of a PVL-negative SCCmec-IVa sublineage of the methicillin-resistant Staphylococcus aureus CC80 lineage: understanding the clonal origin of CA-MRSA.
Clinical Microbiology and Infection.
24.
2018
Pelvic inflammatory disease risk following negative results from chlamydia nucleic acid amplification tests (NAATs) versus non-NAATs in Denmark: A retrospective cohort.
PLoS Medicine.
15.
2018
Typing of vancomycin-resistant enterococci with MALDI-TOF mass spectrometry in a nosocomial outbreak setting.
Clinical Microbiology and Infection.
24.
2018
Update on prevalence and mechanisms of resistance to linezolid, tigecycline and daptomycin in enterococci in Europe: towards a common nomenclature.
Drug Resistance Updates.
40.
2018
Use of a Regression Model to Study Host-Genomic Determinants of Phage Susceptibility in MRSA.
Antibiotics.
7.
2018
Analytical and clinical performance of the Hologic Aptima HCV Quant Dx Assay for the quantification of HCV RNA in plasma samples.
Journal of Virological Methods.
248.
2017
Comparison of the Hologic Aptima HIV-1 Quant Dx Assay to the Roche COBAS Ampliprep/COBAS TaqMan HIV-1 Test v2.0 for the quantification of HIV-1 RNA in plasma samples..
Journal of Clinical Virology.
92.
2017
Comparison of the population excess fraction of Chlamydia trachomatis infection on pelvic inflammatory disease at 12-months in the presence and absence of chlamydia testing and treatment: Systematic review and retrospective cohort analysis.
PLoS ONE.
12.
2017
Determination of Elizabethkingia Diversity by MALDI-TOF Mass Spectrometry and Whole-Genome Sequencing - Volume 23, Number 2—February 2017 - Emerging Infectious Diseases journal - CDC.
Emerging Infectious Diseases.
23.
2017
Draft genome sequence of a Kluyvera intermedia isolate from a patient with a pancreatic abscess.
Journal of Global Antimicrobial Resistance.
10.
2017
Emergence of Livestock-Associated Methicillin-Resistant Staphylococcus aureus Bloodstream Infections in Denmark..
Clinical Infectious Diseases.
65.
2017
Emergence of vanA Enterococcus faecium in Denmark, 2005-15..
Journal of Antimicrobial Chemotherapy.
72.
2017
Erratum to: Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease.
European Journal of Clinical Microbiology & Infectious Diseases.
36.
2017
Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease.
European Journal of Clinical Microbiology & Infectious Diseases.
36.
2017
Evidence for the evolutionary steps leading to mecA-mediated β-lactam resistance in staphylococci.
PLOS Genetics.
13.
2017
Evolutionary Origin of the Staphylococcal Cassette Chromosome mec (SCCmec).
Antimicrobial Agents and Chemotherapy.
61.
2017
Genetic characterisation confirms sporadic occurrence of vancomycin-resistant Enterococcus faecalis in Copenhagen, Denmark.
International Journal of Antimicrobial Agents.
50.
2017
Genome‐wide‐analyses of Listeria monocytogenes from food‐processing plants reveal clonal diversity and date the emergence of persisting sequence types.
Environmental Microbiology Reports.
9.
2017
Genomic analysis of 495 vancomycin-resistant Enterococcus faecium reveals broad dissemination of a vanA plasmid in more than 19 clones from Copenhagen, Denmark..
Journal of Antimicrobial Chemotherapy.
72.
2017
Methicillin-resistant Staphylococcus aureus emerged long before the introduction of methicillin into clinical practice.
Genome Biology.
18.
2017
Multidrug-resistant Neisseria gonorrhoeae infection with ceftriaxone resistance and intermediate resistance to azithromycin, Denmark, 2017.
Eurosurveillance.
22.
2017
RUCS: rapid identification of PCR primers for unique core sequences..
Bioinformatics.
33.
2017
Signatures of cytoplasmic proteins in the exoproteome distinguish community- and hospital-associated methicillin-resistant Staphylococcus aureus USA300 lineages.
Virulence.
8.
2017
Staphylococcal aureus Enterotoxin C and Enterotoxin-Like L Associated with Post-partum Mastitis.
Frontiers in Microbiology.
8.
2017
Susceptibility of vancomycin-resistant and -sensitive Enterococcus faecium obtained from Danish hospitals to benzalkonium chloride, chlorhexidine and hydrogen peroxide biocides.
Journal of Medical Microbiology.
66.
2017
Whole Genome Sequencing of Danish Staphylococcus argenteus Reveals a Genetically Diverse Collection with Clear Separation from Staphylococcus aureus.
Frontiers in Microbiology.
8.
2017
Bacterial viruses enable their host to acquire antibiotic resistance genes from neighbouring cells.
Nature Communications.
7.
2016
Comparison of the Hologic Aptima HCV Quant Dx assay to the Roche COBAS Ampliprep/COBAS TaqMan HCV Test v2.0 for the quantification of HCV-RNA in plasma samples.
Journal of Clinical Virology.
82.
2016
Comparison of the Hologic Aptima HIV-1 Quant Dx assay to the Roche COBAS Ampliprep/COBAS TaqMan HIV-1 Test v2.0 for the quantification of HIV-RNA in plasma samples.
Journal of Clinical Virology.
82.
2016
Erratum for Gudeta et al., The Soil Microbiota Harbors a Diversity of Carbapenem-Hydrolyzing β-Lactamases of Potential Clinical Relevance.
Antimicrobial Agents and Chemotherapy.
60.
2016
Evidence for Human Adaptation and Foodborne Transmission of Livestock-Associated Methicillin-Resistant Staphylococcus aureus.
Clinical Infectious Diseases.
63.
2016
Fatal Septicemia Linked to Transmission of MRSA Clonal Complex 398 in Hospital and Nursing Home, Denmark - Volume 22, Number 5—May 2016 - Emerging Infectious Diseases journal - CDC.
Emerging Infectious Diseases.
22.
2016
Novel Pathways for Ameliorating the Fitness Cost of Gentamicin Resistant Small Colony Variants.
Frontiers in Microbiology.
7.
2016
Risk of reproductive complications following chlamydia testing: a population-based retrospective cohort study in Denmark.
The Lancet Infectious Diseases.
16.
2016
Sexually transmitted infections and use of contraceptives in women living with HIV in Denmark – the SHADE cohort.
BMC Infectious Diseases.
16.
2016
The Soil Microbiota Harbors a Diversity of Carbapenem-Hydrolyzing β-Lactamases of Potential Clinical Relevance.
Antimicrobial Agents and Chemotherapy.
60.
2016
Core Genome Multilocus Sequence Typing Scheme for High-Resolution Typing of Enterococcus faecium.
Journal of Clinical Microbiology.
53.
2015
Increased risk of arterial thromboembolic events after Staphylococcus aureus bacteremia: A matched cohort study.
Journal of Infection.
71.
2015
Monitoring meticillin resistant Staphylococcus aureus and its spread in Copenhagen, Denmark, 2013, through routine whole genome sequencing..
Eurosurveillance.
20.
2015
Multiple hospital outbreaks of vanA Enterococcus faecium in Denmark, 2012–13, investigated by WGS, MLST and PFGE.
Journal of Antimicrobial Chemotherapy.
70.
2015
Screening for MRSA in Danish hospitals – does it work?..
Ugeskrift for Laeger.
177.
2015
Staphylococcus aureus spa type t437: identification of the most dominant community-associated clone from Asia across Europe.
Clinical Microbiology and Infection.
21.
2015
The New Macrolide-Lincosamide-Streptogramin B Resistance Gene erm(45) Is Located within a Genomic Island in Staphylococcus fleurettii.
Antimicrobial Agents and Chemotherapy.
59.
2015
Comparing Whole-Genome Sequencing with Sanger Sequencing for spa Typing of Methicillin-Resistant Staphylococcus aureus.
Journal of Clinical Microbiology.
52.
2014
Detection of mecC methicillin-resistant Staphylococcus aureus with a semi-selective enrichment broth.
Journal of Antimicrobial Chemotherapy.
69.
2014
Evolution of methicillin-resistant Staphylococcus aureus towards increasing resistance.
Journal of Antimicrobial Chemotherapy.
69.
2014
Fuldgenomsekventering af mikroorganismer: et nyt værktøj i klinisk mikrobiologi..
Ugeskrift for Laeger.
176.
2014
Increased risk of venous thromboembolism within the first year after Staphylococcus aureus bacteraemia: a nationwide observational matched cohort study.
Journal of Internal Medicine.
275.
2014
Insights into Alpha-Hemolysin (Hla) Evolution and Expression among Staphylococcus aureus Clones with Hospital and Community Origin.
PLoS ONE.
9.
2014
Nasal Carriage of Methicillin Resistant Staphylococci.
Microbial Drug Resistance.
20.
2014
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dataset
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Description of the study cohort (1998–2001) by chlamydia test type..
public-library-of-science.
2018
Pelvic inflammatory disease risk following negative results from chlamydia nucleic acid amplification tests (NAATs) versus non-NAATs in Denmark: A retrospective cohort.
public-library-of-science.
2018
Unadjusted and adjusted logistic regression analysis of PID by 12 months by chlamydia test type, age, year of test and laboratory area, overall, and stratified by chlamydia status..
public-library-of-science.
2018
Evidence for the evolutionary steps leading to mecA-mediated β-lactam resistance in staphylococci.
public-library-of-science.
2017
Main characteristics of β-lactam resistant strains as defined by the ECCOF of 3 μg/mL..
public-library-of-science.
2017
Number of discontinuities in the order of 1759 core genes of the 76 S. sciuri genomes when compared with the S. sciuri sciuri reference genome NCTC12103..
public-library-of-science.
2017
Summary of risk estimates..
public-library-of-science.
2017
Summary of the included studies..
public-library-of-science.
2017
Insights into Alpha-Hemolysin (Hla) Evolution and Expression among Staphylococcus aureus Clones with Hospital and Community Origin.
public-library-of-science.
2014
Strains data distribution based on promoter allotypes..
public-library-of-science.
2014
Summary of molecular characterization, sequence variation and relative expression rates of S. aureus strains collection..
public-library-of-science.
2014
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hide from search
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Analysis of mutations in the fabI gene of S. epidermidis and the upstream promoter region..
public-library-of-science.
2013
Distribution of triclosan tolerance among S. epidermidis isolates from 1965-66 (old) and 2010-11 (current)..
public-library-of-science.
2013
Risk factors* for MRSA acquisition..
public-library-of-science.
2013
SCCmec type of the 302 isolates..
public-library-of-science.
2013
Staphylococcus epidermidis Isolated in 1965 Are More Susceptible to Triclosan than Current Isolates.
public-library-of-science.
2013
Susceptibility to triclosan among S. epidermidis isolates from 1965–66 (old) and from 2010–11 (current) as determined by their minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC)..
public-library-of-science.
2013
Triclosan and antibiotic susceptibility of parental strains from 1965-66 (65–13 and 66–01) and from 2010–11 (BD-62, Van-1, BD-12 and BD-24) and their triclosan laboratory exposed descendents..
public-library-of-science.
2013
Virulence gene profile of a MRSA isolate from the neonatal outbreak (Mette Theilgaard Christiansen, personal communication)..
public-library-of-science.
2013
dru types found in more than two isolates and restricted to one SCCmec type..
public-library-of-science.
2013
dru types present in more than one SCCmec typea..
public-library-of-science.
2013
A nationwide study of comorbidity and risk of reinfection after Staphylococcus aureus bacteraemia.
Journal of Infection.
2013
Complete Genome Sequence of Staphylococcus aureus Strain M1, a Unique t024-ST8-IVa Danish Methicillin-Resistant S. aureus Clone.
Microbiology Resource Announcements.
2013
Recently introduced qacA/B genes in Staphylococcus epidermidis do not increase chlorhexidine MIC/MBC.
Journal of Antimicrobial Chemotherapy.
2013
Staphylococcus aureus but not Listeria monocytogenes adapt to triclosan and adaptation correlates with increased fabI expression and agr deficiency.
BMC Microbiology.
2013
Staphylococcus epidermidis Isolated in 1965 Are More Susceptible to Triclosan than Current Isolates.
PLoS ONE.
2013
Table S1 - An Unexpected Location of the Arginine Catabolic Mobile Element (ACME) in a USA300-Related MRSA Strain.
public-library-of-science.
2011
A Timescale for Evolution, Population Expansion, and Spatial Spread of an Emerging Clone of Methicillin-Resistant Staphylococcus aureus.
public-library-of-science.
2010
Results of Bayesian analyses..
public-library-of-science.
2010
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preprint
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Evolution and global transmission of a multidrug-resistant, community-associated MRSA lineage from the Indian subcontinent.
bioRxiv.
2017
Genomics-Based Identification of Microorganisms in Human Ocular Body Fluid.
bioRxiv.
2017
Methicillin resistant Staphylococcus aureus emerged long before the introduction of methicillin in to clinical practice.
bioRxiv.
2017