selected publications
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academic article
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Construction of Red Fox Chromosomal Fragments from the Short-Read Genome Assembly.
Genes.
9.
2018
Draft genome of the milu (Elaphurus davidianus).
GigaScience.
7.
2018
Earth BioGenome Project: Sequencing life for the future of life.
Proceedings of the National Academy of Sciences of the United States of America.
115.
2018
Erratum to: Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing.
GigaScience.
7.
2018
Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat.
Nature Ecology & Evolution.
2.
2018
Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours.
Nature Ecology & Evolution.
2.
2018
The bird’s-eye view on chromosome evolution.
Genome Biology.
19.
2018
The first AsiaEvo conference, connecting Asian evolutionary biologists to the world.
National Science Review.
5.
2018
Towards reconstructing the ancestral brain gene-network regulating caste differentiation in ants.
Nature Ecology & Evolution.
2.
2018
A soft selective sweep during rapid evolution of gentle behaviour in an Africanized honeybee.
Nature Communications.
8.
2017
Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing.
GigaScience.
6.
2017
Constrained vertebrate evolution by pleiotropic genes.
Nature Ecology & Evolution.
1.
2017
Draft genome of the Marco Polo Sheep (Ovis ammon polii).
GigaScience.
6.
2017
Functional roles of Aves class-specific cis-regulatory elements on macroevolution of bird-specific features.
Nature Communications.
8.
2017
Genome sequence of a diabetes-prone rodent reveals a mutation hotspot around the ParaHox gene cluster.
Proceedings of the National Academy of Sciences of the United States of America.
114.
2017
Sequencing, de novo assembling, and annotating the genome of the endangered Chinese crocodile lizard Shinisaurus crocodilurus.
GigaScience.
6.
2017
Bone-associated gene evolution and the origin of flight in birds.
BMC Genomics.
17.
2016
Draft genome of the leopard gecko, Eublepharis macularius.
GigaScience.
5.
2016
Evolutionary trajectories of snake genes and genomes revealed by comparative analyses of five-pacer viper.
Nature Communications.
7.
2016
RES-Scanner: a software package for genome-wide identification of RNA-editing sites.
GigaScience.
5.
2016
Reciprocal genomic evolution in the ant–fungus agricultural symbiosis.
Nature Communications.
7.
2016
The genome of the largest bony fish, ocean sunfish (Mola mola), provides insights into its fast growth rate.
GigaScience.
5.
2016
Whole-Genome Identification, Phylogeny, and Evolution of the Cytochrome P450 Family 2 (CYP2) Subfamilies in Birds.
Genome Biology and Evolution.
8.
2016
A genomic comparison of two termites with different social complexity.
Frontiers in Genetics.
6.
2015
Ancient population genomics and the study of evolution.
Philosophical Transactions of the Royal Society B Biological Sciences.
370.
2015
Avianbase: a community resource for bird genomics.
Genome Biology.
16.
2015
Erratum to: The draft genome of a socially polymorphic halictid bee, Lasioglossum albipes.
Genome Biology.
16.
2015
Gene loss, adaptive evolution and the co-evolution of plumage coloration genes with opsins in birds.
BMC Genomics.
16.
2015
Genomic legacy of the African cheetah, Acinonyx jubatus.
Genome Biology.
16.
2015
Genomic signatures of evolutionary transitions from solitary to group living.
Science.
348.
2015
High-coverage sequencing and annotated assembly of the genome of the Australian dragon lizard Pogona vitticeps.
GigaScience.
4.
2015
Improving the ostrich genome assembly using optical mapping data.
GigaScience.
4.
2015
Olfactory Receptor Subgenomes Linked with Broad Ecological Adaptations in Sauropsida.
Molecular Biology and Evolution.
32.
2015
Outbred genome sequencing and CRISPR/Cas9 gene editing in butterflies.
Nature Communications.
6.
2015
Phylogenomic analyses data of the avian phylogenomics project.
GigaScience.
4.
2015
Reference genome of wild goat (capra aegagrus) and sequencing of goat breeds provide insight into genic basis of goat domestication.
BMC Genomics.
16.
2015
Response to Comment on “Whole-genome analyses resolve early branches in the tree of life of modern birds”.
Science.
349.
2015
Temporal Dynamics of Avian Populations during Pleistocene Revealed by Whole-Genome Sequences.
Current Biology.
25.
2015
Whole-genome sequence of the Tibetan frog Nanorana parkeri and the comparative evolution of tetrapod genomes.
Proceedings of the National Academy of Sciences of the United States of America.
112.
2015
A flock of genomes.
Science.
346.
2014
Adaptations to a Subterranean Environment and Longevity Revealed by the Analysis of Mole Rat Genomes.
Cell Reports.
8.
2014
Caste-specific RNA editomes in the leaf-cutting ant Acromyrmex echinatior.
Nature Communications.
5.
2014
Comparative genomic data of the Avian Phylogenomics Project.
GigaScience.
3.
2014
Comparative genomics reveals insights into avian genome evolution and adaptation.
Science.
346.
2014
Complementary symbiont contributions to plant decomposition in a fungus-farming termite.
Proceedings of the National Academy of Sciences of the United States of America.
111.
2014
Complex evolutionary trajectories of sex chromosomes across bird taxa.
Science.
346.
2014
Convergent transcriptional specializations in the brains of humans and song-learning birds.
Science.
346.
2014
Dynamic evolution of the alpha (α) and beta (β) keratins has accompanied integument diversification and the adaptation of birds into novel lifestyles.
BMC Evolutionary Biology.
14.
2014
Epigenetic modification and inheritance in sexual reversal of fish.
Genome Research.
24.
2014
Evidence for a single loss of mineralized teeth in the common avian ancestor.
Science.
346.
2014
Evolutionary Genomics and Adaptive Evolution of the Hedgehog Gene Family (Shh, Ihh and Dhh) in Vertebrates.
PLoS ONE.
9.
2014
Genomic Takeover by Transposable Elements in the Strawberry Poison Frog.
Molecular Biology and Evolution.
35.
2014
Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species.
Genome Biology.
15.
2014
Low frequency of paleoviral infiltration across the avian phylogeny.
Genome Biology.
15.
2014
Molecular traces of alternative social organization in a termite genome.
Nature Communications.
5.
2014
Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes.
Nature Communications.
5.
2014
Population Genomics Reveal Recent Speciation and Rapid Evolutionary Adaptation in Polar Bears.
Cell.
157.
2014
Temporal genomic evolution of bird sex chromosomes.
BMC Evolutionary Biology.
14.
2014
The Genome of the Clonal Raider Ant Cerapachys biroi.
Current Biology.
24.
2014
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs.
Science.
346.
2014
Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment.
GigaScience.
3.
2014
Whole-genome analyses resolve early branches in the tree of life of modern birds.
Science.
346.
2014
Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle.
Nature Genetics.
46.
2014
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dataset
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Supplemental Material for Kapheim et al., 2018.
gsa-journals.
2019
Additional file 3 of Genomic legacy of the African cheetah, Acinonyx jubatus.
springer-nature.
2015
Evolutionary Genomics and Adaptive Evolution of the Hedgehog Gene Family (Shh, Ihh and Dhh) in Vertebrates.
public-library-of-science.
2014
Gene details for Cerapachys biroi chemosensory genes, UGTs and CYPs.
dryad.
2014
Likelihood parameter estimates under lineage-specific model of post-duplication branches of Hh vertebrate paralogs, branch calculated with PAML v4.3 [51]..
public-library-of-science.
2014
Likelihood parameter estimates under site-specific models of Hh vertebrate paralogs, branch calculated with PAML v4.3 [51]..
public-library-of-science.
2014
MUSCLE alignment of insect UDP glycosyltransferases.
dryad.
2014
MUSCLE alignment of insect cytochrome P450 genes.
dryad.
2014
NEXUS file of maximum likelihood tree for insect CYPs.
dryad.
2014
NEXUS file of maximum likelihood tree for insect UGTs.
dryad.
2014
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hide from search
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A draft genome assembly of spotted hyena, Crocuta crocuta.
springer-nature.
2020
Functional annotation.
springer-nature.
2020
Gene family construction.
springer-nature.
2020
Gene family construction statistic.
springer-nature.
2020
Gene structure annotation.
springer-nature.
2020
Metadata record for: A draft genome assembly of spotted hyena, Crocuta crocuta.
springer-nature.
2020
Phylogenetic tree.
springer-nature.
2020
Protein sequence.
springer-nature.
2020
Repeat annotation.
springer-nature.
2020
Single-copy orthologues alignmens.
springer-nature.
2020
Comparative Analysis of Bat Genomes Provides Insight into the Evolution of Flight and Immunity.
Science.
2013
Draft genome sequence of the Tibetan antelope.
Nature Communications.
2013
Genome analysis reveals insights into physiology and longevity of the Brandt’s bat Myotis brandtii.
Nature Communications.
2013
Genome of the Chinese tree shrew.
Nature Communications.
2013
Genomic Diversity and Evolution of the Head Crest in the Rock Pigeon.
Science.
2013
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.
Nature.
2013
The draft genome of a socially polymorphic halictid bee, Lasioglossum albipes.
Genome Biology.
2013
The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan.
Nature Genetics.
2013
(A) Comparison of sequencing based point variants and variants between references. (B) Coding SNP summary; piN refers to X and piS refers to Y. dN indicates X and dS indicates Y..
public-library-of-science.
2012
An Effort to Use Human-Based Exome Capture Methods to Analyze Chimpanzee and Macaque Exomes.
public-library-of-science.
2012
Comparison of different scanning regions and theoretical coverage of genes..
public-library-of-science.
2012
Data production..
public-library-of-science.
2012
Distribution of orthologous score (OS) for macaques..
public-library-of-science.
2012
Genomic features of captured and not captured targets..
public-library-of-science.
2012
Indel summary..
public-library-of-science.
2012
Transcriptome and Network Changes in Climbers at Extreme Altitudes.
public-library-of-science.
2012
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preprint