selected publications
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academic article
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Differences in the optical properties of valve and girdle band in a centric diatom.
Interface Focus.
9.
2019
Contrasting impacts of light reduction on sediment biogeochemistry in deep- and shallow-water tropical seagrass assemblages (Green Island, Great Barrier Reef).
Marine Environmental Research.
136.
2018
Extracellular hydrogen peroxide measurements using a flow injection system in combination with microdialysis probes – Potential and challenges.
Free Radical Biology and Medicine.
128.
2018
Flow Injection Analysis with Microdialysis Probes Enable Minimally Invasive and Dynamic H2O2 Measurements.
Proceedings.
2.
2018
Functionalized Bioink with Optical Sensor Nanoparticles for O2 Imaging in 3D‐Bioprinted Constructs.
Advanced Functional Materials.
28.
2018
In Vitro Community Synergy between Bacterial Soil Isolates Can Be Facilitated by pH Stabilization of the Environment.
Applied and Environmental Microbiology.
84.
2018
In situ metabolomic- and transcriptomic-profiling of the host-associated cyanobacteria Prochloron and Acaryochloris marina.
The ISME Journal: Multidisciplinary Journal of Microbial Ecology.
12.
2018
Modulation of the light field related to valve optical properties of raphid diatoms: implications for niche differentiation in the microphytobenthos.
Marine Ecology Progress Series.
588.
2018
Seagrass rhizosphere microenvironment alters plant‐associated microbial community composition.
Environmental Microbiology.
20.
2018
Structure‐based optics of centric diatom frustules: modulation of the in vivo light field for efficient diatom photosynthesis.
New Phytologist.
219.
2018
Symbiodinium-Induced Formation of Microbialites: Mechanistic Insights From in Vitro Experiments and the Prospect of Its Occurrence in Nature.
Frontiers in Microbiology.
9.
2018
Tools for studying growth patterns and chemical dynamics of aggregated Pseudomonas aeruginosa exposed to different electron acceptors in an alginate bead model.
npj Biofilms and Microbiomes.
4.
2018
Corrigendum: Flow and Coral Morphology Control Coral Surface pH: Implications for the Effects of Ocean Acidification.
Frontiers in Marine Science.
4.
2017
Diffusion or advection? Mass transfer and complex boundary layer landscapes of the brown alga Fucus vesiculosus.
Journal of The Royal Society Interface.
14.
2017
Hyperbaric Oxygen Sensitizes Anoxic Pseudomonas aeruginosa Biofilm to Ciprofloxacin.
Antimicrobial Agents and Chemotherapy.
61.
2017
In situ oxygen dynamics and carbon turnover in an intertidal sediment (Skallingen, Denmark).
Marine Ecology Progress Series.
566.
2017
In vivo Microscale Measurements of Light and Photosynthesis during Coral Bleaching: Evidence for the Optical Feedback Loop?.
Frontiers in Microbiology.
8.
2017
In vivo imaging of coral tissue and skeleton with optical coherence tomography.
Journal of The Royal Society Interface.
14.
2017
Kleptoplast photosynthesis is nutritionally relevant in the sea slug Elysia viridis.
Scientific Reports.
7.
2017
Light Sheet Microscopy Imaging of Light Absorption and Photosynthesis Distribution in Plant Tissue.
Plant Physiology.
175.
2017
Microenvironmental characteristics and physiology of biofilms in chronic infections of CF patients are strongly affected by the host immune response.
Apmis.
125.
2017
Phototrophic microbes form endolithic biofilms in ikaite tufa columns (SW Greenland).
Environmental Microbiology.
19.
2017
Possibilities and Challenges for Quantitative Optical Sensing of Hydrogen Peroxide.
Chemosensors.
5.
2017
Pseudomonas aeruginosa Aggregate Formation in an Alginate Bead Model System Exhibits In Vivo-Like Characteristics.
Applied and Environmental Microbiology.
83.
2017
Radiative Energy Budgets of Phototrophic Surface-Associated Microbial Communities and their Photosynthetic Efficiency Under Diffuse and Collimated Light.
Frontiers in Microbiology.
8.
2017
Seagrass-Mediated Phosphorus and Iron Solubilization in Tropical Sediments..
Environmental Science and Technology.
51.
2017
Sediment Resuspension and Deposition on Seagrass Leaves Impedes Internal Plant Aeration and Promotes Phytotoxic H2S Intrusion.
Frontiers in Plant Science.
8.
2017
The Consequences of Being in an Infectious Biofilm: Microenvironmental Conditions Governing Antibiotic Tolerance.
International Journal of Molecular Sciences.
18.
2017
Chlorophyll f distribution and dynamics in cyanobacterial beachrock biofilms.
Journal of Phycology.
52.
2016
Design and Application of an Optical Sensor for Simultaneous Imaging of pH and Dissolved O 2 with Low Cross-Talk.
ACS Sensors.
1.
2016
Development of a rechargeable optical hydrogen peroxide sensor – sensor design and biological application.
Analyst.
141.
2016
Editorial: Systems Biology and Ecology of Microbial Mat Communities.
Frontiers in Microbiology.
7.
2016
Fiber‐Optic Probes for Small‐Scale Measurements of Scalar Irradiance.
Photochemistry and Photobiology.
92.
2016
Flow and Coral Morphology Control Coral Surface pH: Implications for the Effects of Ocean Acidification.
Frontiers in Marine Science.
3.
2016
Heat generation and light scattering of green fluorescent protein-like pigments in coral tissue.
Scientific Reports.
6.
2016
In Situ Hydrogen Dynamics in a Hot Spring Microbial Mat during a Diel Cycle.
Applied and Environmental Microbiology.
82.
2016
In situ Dynamics of O2, pH, Light, and Photosynthesis in Ikaite Tufa Columns (Ikka Fjord, Greenland)—A Unique Microbial Habitat.
Frontiers in Microbiology.
7.
2016
In-vivo imaging of O2 dynamics on coral surfaces spray-painted with sensor nanoparticles.
Sensors and Actuators B Chemical.
237.
2016
Light and O2 microenvironments in two contrasting diatom-dominated coastal sediments.
Marine Ecology Progress Series.
545.
2016
Light microenvironment and single-cell gradients of carbon fixation in tissues of symbiont-bearing corals.
The ISME Journal: Multidisciplinary Journal of Microbial Ecology.
10.
2016
Monte Carlo Modeling of Photon Propagation Reveals Highly Scattering Coral Tissue.
Frontiers in Plant Science.
7.
2016
Nanoparticle‐based measurements of pH and O2 dynamics in the rhizosphere of Zostera marina L.: effects of temperature elevation and light‐dark transitions.
Plant Cell & Environment.
39.
2016
Photo-Protection in the Centric Diatom Coscinodiscus granii is Not Controlled by Chloroplast High-Light Avoidance Movement.
Frontiers in Marine Science.
2.
2016
Photoregulation in a Kleptochloroplastidic Dinoflagellate, Dinophysis acuta.
Frontiers in Microbiology.
7.
2016
Photosynthetic Acclimation of Symbiodinium in hospite Depends on Vertical Position in the Tissue of the Scleractinian Coral Montastrea curta.
Frontiers in Microbiology.
7.
2016
Regulation of Intertidal Microphytobenthos Photosynthesis Over a Diel Emersion Period Is Strongly Affected by Diatom Migration Patterns.
Frontiers in Microbiology.
7.
2016
Reinforcement of the bactericidal effect of ciprofloxacin on Pseudomonas aeruginosa biofilm by hyperbaric oxygen treatment.
International Journal of Antimicrobial Agents.
47.
2016
A simple laminated paper-based sensor for temperature sensing and imaging.
Sensors and Actuators B Chemical.
210.
2015
CaCO3 Precipitation in Multilayered Cyanobacterial Mats: Clues to Explain the Alternation of Micrite and Sparite Layers in Calcareous Stromatolites.
Life.
5.
2015
Chlorophyll f-driven photosynthesis in a cavernous cyanobacterium.
The ISME Journal: Multidisciplinary Journal of Microbial Ecology.
9.
2015
Denitrification by cystic fibrosis pathogens – Stenotrophomonas maltophilia is dormant in sputum.
International Journal of Medical Microbiology.
305.
2015
Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms.
Frontiers in Microbiology.
6.
2015
Epiphyte-cover on seagrass (Zostera marina L.) leaves impedes plant performance and radial O2 loss from the below-ground tissue.
Frontiers in Marine Science.
2.
2015
Etching of multimode optical glass fibers: A new method for shaping the measuring tip and immobilization of indicator dyes in recessed fiber-optic microprobes.
Sensors and Actuators B Chemical.
211.
2015
Microsensor measurements of hydrogen gas dynamics in cyanobacterial microbial mats.
Frontiers in Microbiology.
6.
2015
Optical sensor nanoparticles in artificial sediments--a new tool to visualize O2 dynamics around the rhizome and roots of seagrasses..
Environmental Science and Technology.
49.
2015
Oxic microshield and local pH enhancement protects Zostera muelleri from sediment derived hydrogen sulphide.
New Phytologist.
205.
2015
Pronounced gradients of light, photosynthesis and O2 consumption in the tissue of the brown alga Fucus serratus.
New Phytologist.
207.
2015
Surface Prochloron.
Environmental Microbiology.
17.
2015
The molecular dimension of microbial species: 1. Ecological distinctions among, and homogeneity within, putative ecotypes of Synechococcus inhabiting the cyanobacterial mat of Mushroom Spring, Yellowstone National Park.
Frontiers in Microbiology.
6.
2015
A split flow chamber with artificial sediment to examine the below-ground microenvironment of aquatic macrophytes.
Marine Biology.
161.
2014
Desiccation stress in two intertidal beachrock biofilms.
Marine Biology.
161.
2014
Effect of red light on the development and quality of mammalian embryos.
Journal of Assisted Reproduction and Genetics.
31.
2014
Effective light absorption and absolute electron transport rates in the coral Pocillopora damicornis.
Plant Physiology and Biochemistry.
83.
2014
Hot moments of N2O transformation and emission in tropical soils from the Pantanal and the Amazon (Brazil).
Soil Biology and Biochemistry.
75.
2014
Lateral light transfer ensures efficient resource distribution in symbiont-bearing corals.
Journal of Experimental Biology.
217.
2014
Light Respiratory Processes and Gross Photosynthesis in Two Scleractinian Corals.
PLoS ONE.
9.
2014
Nitric oxide production by polymorphonuclear leucocytes in infected cystic fibrosis sputum consumes oxygen.
Clinical & Experimental Immunology.
177.
2014
Nitrous Oxide Production in Sputum from Cystic Fibrosis Patients with Chronic Pseudomonas aeruginosa Lung Infection.
PLoS ONE.
9.
2014
Ocean acidification and warming alter photosynthesis and calcification of the symbiont-bearing foraminifera Marginopora vertebralis.
Marine Biology.
161.
2014
Physiological levels of nitrate support anoxic growth by denitrification of Pseudomonas aeruginosa at growth rates reported in cystic fibrosis lungs and sputum.
Frontiers in Microbiology.
5.
2014
Polymorphonuclear Leukocytes Restrict Growth of Pseudomonas aeruginosa in the Lungs of Cystic Fibrosis Patients.
Infection and Immunity.
82.
2014
Radiative energy budget reveals high photosynthetic efficiency in symbiont-bearing corals.
Journal of The Royal Society Interface.
11.
2014
Rapid TaqMan-Based Quantification of Chlorophyll d-Containing Cyanobacteria in the Genus Acaryochloris.
Applied and Environmental Microbiology.
80.
2014
Spatial patterns and links between microbial community composition and function in cyanobacterial mats.
Frontiers in Microbiology.
5.
2014
Spectral Effects on Symbiodinium Photobiology Studied with a Programmable Light Engine.
PLoS ONE.
9.
2014
The in situ light microenvironment of corals.
Limnology and Oceanography.
59.
2014
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chapter
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CHAPTER 7 Optical O 2 Sensing in Aquatic Systems and Organisms.
Royal Society of Chemistry (RSC).
2018
Rhizome, Root/Sediment Interactions, Aerenchyma and Internal Pressure Changes in Seagrasses.
Springer Nature.
2018
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conference paper
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Direct and diffuse light propagation through coral tissue.
Proceedings of SPIE.
2014
-
dataset
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Table_1_Optical Properties of Living Corals Determined With Diffuse Reflectance Spectroscopy.DOCX.
frontiers.
2019
Girdle band optics_data.xls from Differences in the optical properties of valve and girdle band in a centric diatom.
the-royal-society.
2018
Highly Photostable Near-Infrared
Fluorescent pH Indicators
and Sensors Based on BF2-Chelated Tetraarylazadipyrromethene
Dyes.
american-chemical-society.
2015
Biometric measures of the hard corals Pocillopora damicornis and Pavona decussata, displaying total protein content (mg cm−2), total chlorophyll per area (Chl a+c2) (mg cm−2), algal cell densities (cells cm−2) and total Chl per cell (pg cell−1) (n = 4; mean ±s.e.m.)..
public-library-of-science.
2014
Demographic data of the patients..
public-library-of-science.
2014
N2O production, consumption, max emission, and cumulated emission in 4 CF sputum samples..
public-library-of-science.
2014
Overview of abbreviations and definition of gas exchange parameters from analyses with the photobioreactor (PBR) and from microsensor measurements..
public-library-of-science.
2014
Photosynthetic performance of Symbiodinium under defined broadband spectra simulating in situ coral tissue and halogen lamp spectral composition..
public-library-of-science.
2014
Spectral Effects on Symbiodinium Photobiology Studied with a Programmable Light Engine.
public-library-of-science.
2014
Table S1 - Light Respiratory Processes and Gross Photosynthesis in Two Scleractinian Corals.
public-library-of-science.
2014
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hide from search
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O2 concentration measured by micro sensors at the bone or tissue surface of Osedax mucofloris inhabiting whale bone in two cuvettes, WB1 and WB2..
public-library-of-science.
2013
O2 concentration measured by micro sensors in a mucus tube wall and at the epidermis of palps of Osedax mucofloris..
public-library-of-science.
2013
Weight specific O2 consumption (MO2) of Osedax mucofloris..
public-library-of-science.
2013
An Optode Sensor Array for Long‐Term In Situ Oxygen Measurements in Soil and Sediment.
Journal of Environmental Quality.
2013
Complete Genome Sequence of the Cystic Fibrosis Pathogen Achromobacter xylosoxidans NH44784-1996 Complies with Important Pathogenic Phenotypes.
PLoS ONE.
2013
Extreme Emission of N2O from Tropical Wetland Soil (Pantanal, South America).
Frontiers in Microbiology.
2013
Methods to Assess High‐Resolution Subsurface Gas Concentrations and Gas Fluxes in Wetland Ecosystems
2013
Newly Isolated Chl d-Containing Cyanobacteria
2013
Reactive oxygen production induced by near-infrared radiation in three strains of the Chl d-containing cyanobacterium Acaryochloris marina.
F1000Research.
2013
Temporal metatranscriptomic patterning in phototrophic Chloroflexi inhabiting a microbial mat in a geothermal spring.
The ISME Journal: Multidisciplinary Journal of Microbial Ecology.
2013
The in vivo biofilm.
Trends in Microbiology.
2013
Microenvironmental changes support evidence of photosynthesis and calcification inhibition in Halimeda under ocean acidification and warming.
pangaea.
2012
Microsensor measurements in photosynthetic microbial mats.
pangaea.
2012
The effect of the inhibitors colchicine (0.5 mM in seawater) and cytochalasin c (2 µM in seawater), on the greening of proto-segments in Halimeda macroloba (see text for further description)..
public-library-of-science.
2011
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patent
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preprint
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Radiative energy budgets of phototrophic surface-associated microbial communities and their photosynthetic efficiency under diffuse and collimated light.
bioRxiv.
2017
Diffusion or advection? Mass transfer and diffusive boundary layer landscapes of the brown alga Fucus vesiculosus.
bioRxiv.
2016
In vivo imaging of coral tissue and skeleton with optical coherence tomography.
bioRxiv.
2016