selected publications
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academic article
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Enterotypes in the landscape of gut microbial community composition.
Nature Microbiology.
3.
2018
Metagenomics-Based, Strain-Level Analysis of Escherichia coli From a Time-Series of Microbiome Samples From a Crohn's Disease Patient.
Frontiers in Microbiology.
9.
2018
A communal catalogue reveals Earth’s multiscale microbial diversity.
Nature.
551.
2017
Evaluating the impact of domestication and captivity on the horse gut microbiome.
Scientific Reports.
7.
2017
The Effects of Captivity on the Mammalian Gut Microbiome..
Integrative and Comparative Biology.
57.
2017
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking.
Nature Biotechnology.
34.
2016
Identifying qualitative effects of different grazing types on below‐ground communities and function in a long‐term field experiment.
Environmental Microbiology.
17.
2015
Molecular cartography of the human skin surface in 3D.
Proceedings of the National Academy of Sciences of the United States of America.
112.
2015
Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains.
PLOS Biology.
12.
2014
Interacting Symbionts and Immunity in the Amphibian Skin Mucosome Predict Disease Risk and Probiotic Effectiveness.
PLoS ONE.
9.
2014
Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill.
The ISME Journal: Multidisciplinary Journal of Microbial Ecology.
8.
2014
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dataset
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Metabolite being cross-fed by the ΔhisD strain to its partner strain, as inferred from sequencing data..
public-library-of-science.
2019
Starting and final growth rates, along with fractional strain abundance of the ΔhisD strain (by characteristic mutation), for each ALE lineage..
public-library-of-science.
2019
The genetic basis for adaptation of model-designed syntrophic co-cultures.
public-library-of-science.
2019
Data_Sheet_1_Metagenomics-Based, Strain-Level Analysis of Escherichia coli From a Time-Series of Microbiome Samples From a Crohn's Disease Patient.PDF.
frontiers.
2018
Diet.Matrix.taxonomy.
dryad.
2018
Sample metadata, Supplementary Table 3.
dryad.
2018
Table_1_Metagenomics-Based, Strain-Level Analysis of Escherichia coli From a Time-Series of Microbiome Samples From a Crohn's Disease Patient.XLSX.
frontiers.
2018
trnL data set.
dryad.
2018
Diet.Matrix.taxonomy.
dryad.
2017
trnL data set.
dryad.
2017
Amphibians from Switzerland sampled for skin peptide effectiveness and mucosome function against Bd, and Bd infection prevalence at different life-history stages..
public-library-of-science.
2014
File S1 - Interacting Symbionts and Immunity in the Amphibian Skin Mucosome Predict Disease Risk and Probiotic Effectiveness.
public-library-of-science.
2014
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