selected publications
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academic article
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Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries.
Nature Microbiology.
3.
2018
Antibody Cross-Reactivity in Antivenom Research.
Toxins.
10.
2018
CHTyper, a Web Tool for Subtyping of Extraintestinal Pathogenic Escherichia coli Based on the fumC and fimH Alleles.
Journal of Clinical Microbiology.
56.
2018
Direct whole-genome sequencing of Plasmodium falciparum specimens from dried erythrocyte spots.
Malaria Journal.
17.
2018
Hospital Epidemiology of Methicillin-Resistant Staphylococcus aureus in a Tertiary Care Hospital in Moshi, Tanzania, as Determined by Whole Genome Sequencing.
BioMed Research International.
2018.
2018
Molecular epidemiology of virulence and antimicrobial resistance determinants in Klebsiella pneumoniae from hospitalised patients in Kilimanjaro, Tanzania.
European Journal of Clinical Microbiology & Infectious Diseases.
37.
2018
Prevalence and risk factors for CTX-M gram-negative bacteria in hospitalized patients at a tertiary care hospital in Kilimanjaro, Tanzania.
European Journal of Clinical Microbiology & Infectious Diseases.
37.
2018
Rapid and precise alignment of raw reads against redundant databases with KMA.
BMC Bioinformatics.
19.
2018
SCCmecFinder, a Web-Based Tool for Typing of Staphylococcal Cassette Chromosome mec in Staphylococcus aureus Using Whole-Genome Sequence Data.
mSphere.
3.
2018
Whole genome sequencing reveals high clonal diversity of Escherichia coli isolated from patients in a tertiary care hospital in Moshi, Tanzania.
Antimicrobial Resistance & Infection Control.
7.
2018
ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope Mapping.
PLoS ONE.
12.
2017
Assembly and analysis of 100 full MHC haplotypes from the Danish population.
Genome Research.
27.
2017
Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
BMC Genomics.
18.
2017
Cross-recognition of a pit viper (Crotalinae) polyspecific antivenom explored through high-density peptide microarray epitope mapping.
PLoS Neglected Tropical Diseases.
11.
2017
Development of a Web Tool for Escherichia coli Subtyping Based on fimH Alleles.
Journal of Clinical Microbiology.
55.
2017
Erratum to: Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease.
European Journal of Clinical Microbiology & Infectious Diseases.
36.
2017
Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease.
European Journal of Clinical Microbiology & Infectious Diseases.
36.
2017
High throughput resistance profiling of Plasmodium falciparum infections based on custom dual indexing and Illumina next generation sequencing-technology.
Scientific Reports.
7.
2017
High-density peptide microarray exploration of the antibody response in a rabbit immunized with a neurotoxic venom fraction.
Toxicon.
138.
2017
MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads.
PLoS ONE.
12.
2017
Multidrug-resistant Neisseria gonorrhoeae infection with ceftriaxone resistance and intermediate resistance to azithromycin, Denmark, 2017.
Eurosurveillance.
22.
2017
Norwegian patients and retail chicken meat share cephalosporin-resistant Escherichia coli and IncK/bla CMY-2 resistance plasmids.
Clinical Microbiology and Infection.
23.
2017
Patterns of infections, aetiological agents and antimicrobial resistance at a tertiary care hospital in northern Tanzania.
Tropical Medicine and International Health.
22.
2017
Perturbed CD8+ T cell TIGIT/CD226/PVR axis despite early initiation of antiretroviral treatment in HIV infected individuals.
Scientific Reports.
7.
2017
PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens..
Journal of Antimicrobial Chemotherapy.
72.
2017
RUCS: rapid identification of PCR primers for unique core sequences..
Bioinformatics.
33.
2017
Sequencing and de novo assembly of 150 genomes from Denmark as a population reference.
Nature.
548.
2017
A Bacterial Analysis Platform: An Integrated System for Analysing Bacterial Whole Genome Sequencing Data for Clinical Diagnostics and Surveillance.
PLoS ONE.
11.
2016
Application of Whole-Genome Sequencing Data for O-Specific Antigen Analysis and In Silico Serotyping of Pseudomonas aeruginosa Isolates.
Journal of Clinical Microbiology.
54.
2016
Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data.
Journal of Antimicrobial Chemotherapy.
71.
2016
Benchtop Whole-Genome Sequencing for Identification of Nosocomial Outbreaks in Tanzania.
Infection Control and Hospital Epidemiology.
37.
2016
CD4+ T cells with an activated and exhausted phenotype distinguish immunodeficiency during aviremic HIV-2 infection.
AIDS.
30.
2016
ChemProt-3.0: a global chemical biology diseases mapping.
Database.
2016.
2016
Global Genomic Epidemiology of Salmonella enterica Serovar Typhimurium DT104.
Applied and Environmental Microbiology.
82.
2016
High-throughput immuno-profiling of mamba (Dendroaspis) venom toxin epitopes using high-density peptide microarrays.
Scientific Reports.
6.
2016
HostPhinder: A Phage Host Prediction Tool.
Viruses.
8.
2016
Identification of Known and Novel Recurrent Viral Sequences in Data from Multiple Patients and Multiple Cancers.
Viruses.
8.
2016
Meta-analysis of proportion estimates of Extended-Spectrum-Beta-Lactamase-producing Enterobacteriaceae in East Africa hospitals.
Antimicrobial Resistance & Infection Control.
5.
2016
MetaPhinder—Identifying Bacteriophage Sequences in Metagenomic Data Sets.
PLoS ONE.
11.
2016
New Genome-Wide Algorithm Identifies Novel In-Vivo Expressed Mycobacterium Tuberculosis Antigens Inducing Human T-Cell Responses with Classical and Unconventional Cytokine Profiles.
Scientific Reports.
6.
2016
Propionibacterium acnes: Disease-Causing Agent or Common Contaminant? Detection in Diverse Patient Samples by Next-Generation Sequencing.
Journal of Clinical Microbiology.
54.
2016
Synthesis and Biological Evaluations of Cytotoxic and Antiangiogenic Triterpenoids-Jacaranone Conjugates..
Medicinal Chemistry.
12.
2016
Automated benchmarking of peptide-MHC class I binding predictions.
Bioinformatics.
31.
2015
Ebolavirus comparative genomics.
FEMS Microbiology Reviews.
39.
2015
High-throughput sequencing enhanced phage display enables the identification of patient-specific epitope motifs in serum.
Scientific Reports.
5.
2015
Insights from 20 years of bacterial genome sequencing.
Functional & Integrative Genomics.
15.
2015
Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance.
Scientific Reports.
5.
2015
Multidimensional Clusters of CD4+ T Cell Dysfunction Are Primarily Associated with the CD4/CD8 Ratio in Chronic HIV Infection.
PLoS ONE.
10.
2015
Novel variation and de novo mutation rates in population-wide de novo assembled Danish trios.
Nature Communications.
6.
2015
Reads2Type: a web application for rapid microbial taxonomy identification.
BMC Bioinformatics.
16.
2015
What Can We Learn from a Metagenomic Analysis of a Georgian Bacteriophage Cocktail?.
Viruses.
7.
2015
A novel approach for characterisation of conformational allergen epitopes combining phage display and high-throughput sequencing.
Clinical and Translational Allergy.
4.
2014
Benchmarking of Methods for Genomic Taxonomy.
Journal of Clinical Microbiology.
52.
2014
Evaluation of Whole Genome Sequencing for Outbreak Detection of Salmonella enterica.
PLoS ONE.
9.
2014
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes.
Nature Biotechnology.
32.
2014
In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing.
Antimicrobial Agents and Chemotherapy.
58.
2014
MR1-restricted MAIT cells display ligand discrimination and pathogen selectivity through distinct T cell receptor usageMAIT cells display pathogen selectivity.
Journal of Experimental Medicine.
211.
2014
Multiparametric Bioinformatics Distinguish the CD4/CD8 Ratio as a Suitable Laboratory Predictor of Combined T Cell Pathogenesis in HIV Infection.
The Journal of Immunology.
192.
2014
NetFCM: A semi‐automated web‐based method for flow cytometry data analysis.
Cytometry Part A.
85.
2014
Rapid Whole-Genome Sequencing for Detection and Characterization of Microorganisms Directly from Clinical Samples.
Journal of Clinical Microbiology.
52.
2014
Rapid Whole-Genome Sequencing for Detection and Characterization of Microorganisms Directly from Clinical Samples.
Journal of Clinical Microbiology.
52.
2014
Real-Time Whole-Genome Sequencing for Routine Typing, Surveillance, and Outbreak Detection of Verotoxigenic Escherichia coli.
Journal of Clinical Microbiology.
52.
2014
Solving the Problem of Comparing Whole Bacterial Genomes across Different Sequencing Platforms.
PLoS ONE.
9.
2014
T-bet and Eomes Are Differentially Linked to the Exhausted Phenotype of CD8+ T Cells in HIV Infection.
PLoS Pathogens.
10.
2014
-
chapter
-
Global Microbial Identifier.
Springer Nature.
2017
The CGE Tool Box.
Springer Nature.
2017
-
dataset
-
Additional file 11: of Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation.
springer-nature.
2019
Additional file 12: of Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation.
springer-nature.
2019
Additional file 13: of Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation.
springer-nature.
2019
Additional file 14: of Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation.
springer-nature.
2019
Additional file 15: of Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation.
springer-nature.
2019
Additional file 16: of Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation.
springer-nature.
2019
Additional file 17: of Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation.
springer-nature.
2019
Ceftriaxone use among inpatients at KCMC hospital..
public-library-of-science.
2019
Data_Sheet_1_Improved Resistance Prediction in Mycobacterium tuberculosis by Better Handling of Insertions and Deletions, Premature Stop Codons, and Filtering of Non-informative Sites.ZIP.
frontiers.
2019
Study population characteristics..
public-library-of-science.
2019
Additional file 1: of Whole genome sequencing reveals high clonal diversity of Escherichia coli isolated from patients in a tertiary care hospital in Moshi, Tanzania.
springer-nature.
2018
Additional file 2: of Whole genome sequencing reveals high clonal diversity of Escherichia coli isolated from patients in a tertiary care hospital in Moshi, Tanzania.
springer-nature.
2018
Additional file 10: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
springer-nature.
2017
Additional file 14: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
springer-nature.
2017
Additional file 15: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
springer-nature.
2017
Additional file 16: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
springer-nature.
2017
Additional file 17: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
springer-nature.
2017
Additional file 18: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
springer-nature.
2017
Additional file 19: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
springer-nature.
2017
Additional file 1: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
springer-nature.
2017
Additional file 20: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
springer-nature.
2017
Additional file 21: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
springer-nature.
2017
Additional file 22: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
springer-nature.
2017
Additional file 23: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
springer-nature.
2017
Additional file 24: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
springer-nature.
2017
Additional file 25: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
springer-nature.
2017
Additional file 26: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
springer-nature.
2017
Additional file 2: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
springer-nature.
2017
Additional file 3: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
springer-nature.
2017
Additional file 4: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
springer-nature.
2017
Additional file 5: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
springer-nature.
2017
Additional file 6: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
springer-nature.
2017
Additional file 7: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
springer-nature.
2017
Additional file 8: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
springer-nature.
2017
Additional file 9: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
springer-nature.
2017
ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope Mapping.
public-library-of-science.
2017
Benchmarking of the in silico data mapped against a bacteria reference sequence database..
public-library-of-science.
2017
Benchmarking of the in vitro data mapped against a bacteria reference sequence database..
public-library-of-science.
2017
Example of target-specific positions of individual peptides..
public-library-of-science.
2017
HSA epitopes..
public-library-of-science.
2017
MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads.
public-library-of-science.
2017
Mock bacterial composition of in vitro and in silico datasets..
public-library-of-science.
2017
Read count benchmark at genus level..
public-library-of-science.
2017
Read count benchmark at species level..
public-library-of-science.
2017
Read count statistics and reference sequence information..
public-library-of-science.
2017
A Bacterial Analysis Platform: An Integrated System for Analysing Bacterial Whole Genome Sequencing Data for Clinical Diagnostics and Surveillance.
public-library-of-science.
2016
Assembly by the internal Assembler..
public-library-of-science.
2016
List of the seven mandatory metadata fields from the CGE metadata template..
public-library-of-science.
2016
MetaPhinder performance measures and predictions for different data subsets..
public-library-of-science.
2016
MetaPhinder—Identifying Bacteriophage Sequences in Metagenomic Data Sets.
public-library-of-science.
2016
Plasmid prediction by the PlasmidFinder algorithm..
public-library-of-science.
2016
Plasmid sequence type prediction by the pMLST algorithm..
public-library-of-science.
2016
Resistance gene prediction by the ResFinder..
public-library-of-science.
2016
Results of MetaPhinder predictions on different prophage data sets..
public-library-of-science.
2016
Sequence type prediction by the MLST algorithm..
public-library-of-science.
2016
Species prediction by KmerFinder..
public-library-of-science.
2016
Virulence gene prediction by the VirulenceFinder..
public-library-of-science.
2016
Multidimensional Clusters of CD4+ T Cell Dysfunction Are Primarily Associated with the CD4/CD8 Ratio in Chronic HIV Infection.
public-library-of-science.
2015
Non-parametric Spearman rank tests correlation analysis of the manual, sFLOCK and aFLOCK immunopathological populations to the clinical parameters..
public-library-of-science.
2015
Summary of the HIV-infected cohort..
public-library-of-science.
2015
Cohort characteristics..
public-library-of-science.
2014
Comparison of the novel SNP procedure, the Nucleotide Difference (ND) method and snpTree..
public-library-of-science.
2014
Epidemiological information for the 47 Salmonella genomes used in this study (source: human)..
public-library-of-science.
2014
Evaluation of Whole Genome Sequencing for Outbreak Detection of Salmonella enterica.
public-library-of-science.
2014
Evaluation results..
public-library-of-science.
2014
Reference Genomes..
public-library-of-science.
2014
Solving the Problem of Comparing Whole Bacterial Genomes across Different Sequencing Platforms.
public-library-of-science.
2014
T-bet and Eomes Are Differentially Linked to the Exhausted Phenotype of CD8+ T Cells in HIV Infection.
public-library-of-science.
2014
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hide from search
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Additional file 2 of CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data.
springer-nature.
2020
Additional file 4 of CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data.
springer-nature.
2020
Additional file 5 of CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data.
springer-nature.
2020
Additional file 6 of CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data.
springer-nature.
2020
Additional file 7 of CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data.
springer-nature.
2020
Additional file 8 of CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data.
springer-nature.
2020
Affinities of peptides to MHC-II alleles..
public-library-of-science.
2013
Comparison of the predictive performance of the PSSM and NetMHCpan methods..
public-library-of-science.
2013
Distribution of the 146 epitopes in different influenza A proteins, and coverage of the predicted epitopes against different strains of influenza A viruses..
public-library-of-science.
2013
Enzyme-linked immunospot (ELISPOT) responses against antigenic peptides in the absence or presence of HLA class I or HLA class II blocking antibodies..
public-library-of-science.
2013
Epitopes per set for all supertype representatives..
public-library-of-science.
2013
Examples of cross-reactive epitopes reported in the literature..
public-library-of-science.
2013
Genomic references.
public-library-of-science.
2013
HLA class I and II subtypes for donors used in the present study..
public-library-of-science.
2013
IFNγ ELISPOT analysis of peptide-specific donor responses..
public-library-of-science.
2013
MCC on cross validation and independent test-set..
public-library-of-science.
2013
Measured HLA-I/peptide affinity of the predicted peptide binders..
public-library-of-science.
2013
Number of transcripts and genes per set..
public-library-of-science.
2013
Parker's propensity scale (from [83])..
public-library-of-science.
2013
PathogenFinder - Distinguishing Friend from Foe Using Bacterial Whole Genome Sequence Data.
public-library-of-science.
2013
Phenotype frequencies..
public-library-of-science.
2013
Predictive performance in AUC on 12 human HLA MHC class I alleles (Peters data set) and on 14 HLA-DR MHC class II alleles (Wang similarity reduced SR dataset)..
public-library-of-science.
2013
Scoring matrix for allele A*0301..
public-library-of-science.
2013
Top 10 ranking non-pathogenic protein families and annotated functions of their proteins for TM-Gammaproteobacteria model..
public-library-of-science.
2013
Top 10 ranking non-pathogenic protein families and annotated functions of their proteins for the WDM model..
public-library-of-science.
2013
Top 10 ranking pathogenic protein families and annotated functions of their proteins for TM-Gammaproteobacteria model..
public-library-of-science.
2013
Top 10 ranking pathogenic protein families and annotated functions of their proteins for the WDM model..
public-library-of-science.
2013
Training, test data and model parameters..
public-library-of-science.
2013
eVOC terms used for cancer subset..
public-library-of-science.
2013
Evaluation of peptide selection approaches for epitope‐based vaccine design.
HLA.
2013
Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing.
Journal of Antimicrobial Chemotherapy.
2013
Identification of Y-Chromosomally Encoded Minor Histocompatibility Antigens Using a Reverse Immunology Approach.
Biology of Blood and Marrow Transplantation.
2013
Low-Bandwidth and Non-Compute Intensive Remote Identification of Microbes from Raw Sequencing Reads.
PLoS ONE.
2013
MHCcluster, a method for functional clustering of MHC molecules.
Immunogenetics.
2013
NetMHCIIpan-3.0, a common pan-specific MHC class II prediction method including all three human MHC class II isotypes, HLA-DR, HLA-DP and HLA-DQ.
Immunogenetics.
2013
PathogenFinder - Distinguishing Friend from Foe Using Bacterial Whole Genome Sequence Data.
PLoS ONE.
2013
SigniSite: Identification of residue-level genotype-phenotype correlations in protein multiple sequence alignments.
Nucleic Acids Research.
2013
Simultaneous alignment and clustering of peptide data using a Gibbs sampling approach.
Bioinformatics.
2013
Structural analysis of B-cell epitopes in antibody:protein complexes.
Molecular Immunology.
2013
Targeting of Conserved Gag-Epitopes in Early HIV Infection Is Associated with Lower Plasma Viral Load and Slower CD4+ T Cell Depletion.
AIDS Research and Human Retroviruses.
2013
Characteristics of peptides and peptide-pools for the five HIV protein regions..
public-library-of-science.
2012
Characteristics of peptides and peptide-pools for the five HIV protein regions..
public-library-of-science.
2012
Characterization of HIV-Specific CD4+ T Cell Responses against Peptides Selected with Broad Population and Pathogen Coverage.
public-library-of-science.
2012
Clinical data of study cohort..
public-library-of-science.
2012
Predictive positive value (PPV) and sensitivity for DiscoTope-2.0, DiscoTope-1.2, PEPITO and ElliPro on the evaluation data set..
public-library-of-science.
2012
Reliable B Cell Epitope Predictions: Impacts of Method Development and Improved Benchmarking.
public-library-of-science.
2012
ChemProt-2.0: visual navigation in a disease chemical biology database.
Nucleic Acids Research.
2012
ELISPOT results on 17DD YFV vaccine-immunized A*02:01 mice..
public-library-of-science.
2011
ELISPOT results on peptide pool-immunized A*02:01 mice..
public-library-of-science.
2011
ELISPOT results on peptide pool-immunized A*24:02 mice..
public-library-of-science.
2011
ELISPOT results on peptide pool-immunized B*07:02 mice..
public-library-of-science.
2011
Human Leukocyte Antigen (HLA) Class I Restricted Epitope Discovery in Yellow Fewer and Dengue Viruses: Importance of HLA Binding Strength.
public-library-of-science.
2011
Summary of ELISPOT results on peptide pool-immunized A*02:01, B*07:02 and A*24:02 mice..
public-library-of-science.
2011
10 top scoring pathogenicity families, and function of their members..
public-library-of-science.
2010
Allele frequencies of 11 HLA class I alleles in different areas of the world..
public-library-of-science.
2010
Binding free energy contribution of each amino acid at different epitope core locations..
public-library-of-science.
2010
Characteristics of WNV-infected patients..
public-library-of-science.
2010
Epitope coverage in ten areas of the World..
public-library-of-science.
2010
Figure S1 - In Silico Prediction of Human Pathogenicity in the γ-Proteobacteria.
public-library-of-science.
2010
Figure S1 - Insight into Antigenic Diversity of VAR2CSA-DBL5ε Domain from Multiple Plasmodium falciparum Placental Isolates.
public-library-of-science.
2010
Identification of CD8+ T Cell Epitopes in the West Nile Virus Polyprotein by Reverse-Immunology Using NetCTL.
public-library-of-science.
2010
Limitations of Ab Initio Predictions of Peptide Binding to MHC Class II Molecules.
public-library-of-science.
2010
PSSM for the DRB1*0101 generated by the contact-based method..
public-library-of-science.
2010
Predicted HLA class I restriction of the 36 observed responses..
public-library-of-science.
2010
Signatures in DBL5ε domain of VAR2CSA expressed by placental parasites..
public-library-of-science.
2010
Structural data used throughout this study to derive the MHC class II structure-based binding predictions..
public-library-of-science.
2010
VAR2CSA-DBL5ε residues Q303, E303 and K303 distribution in relation to placental parasite CSA/CSPG binding affinity..
public-library-of-science.
2010
Fractions of MHC class I and II ligand-containing proteins that belong to a selection of GO cellular component terms..
public-library-of-science.
2009
Systematic Characterisation of Cellular Localisation and Expression Profiles of Proteins Containing MHC Ligands.
public-library-of-science.
2009
Identification of Peptide Binding Cores..
public-library-of-science.
2008
Leave-One-Molecule-Out Benchmark Results in Terms of the AUC and Pearson's Correlation Values..
public-library-of-science.
2008
Prospective Validation Using an Hitherto Uncharacterized HLA Molecule..
public-library-of-science.
2008
Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan.
public-library-of-science.
2008
Structural Insight into Epitopes in the Pregnancy-Associated Malaria Protein VAR2CSA.
public-library-of-science.
2008
Comparison of various validated predictors of peptide-HLA binding..
public-library-of-science.
2007
NetMHCpan, a Method for Quantitative Predictions of Peptide Binding to Any HLA-A and -B Locus Protein of Known Sequence.
public-library-of-science.
2007
Performance for the different alleles in terms of the Pearsons correlation for the “leave-one-out” experiment with added random negatives..
public-library-of-science.
2007
Performance of the pan-specific binding predictors..
public-library-of-science.
2007
Complete List of AUC Values.
public-library-of-science.
2006
Epitope Mapping and Topographic Analysis of VAR2CSA DBL3X Involved in P. falciparum Placental Sequestration.
public-library-of-science.
2006
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patent
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preprint