selected publications
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academic article
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Cancer associated fibroblasts (CAFs) are activated in cutaneous basal cell carcinoma and in the peritumoural skin.
BMC Cancer.
17.
2017
Cutavirus in Cutaneous Malignant Melanoma - Volume 23, Number 2—February 2017 - Emerging Infectious Diseases journal - CDC.
Emerging Infectious Diseases.
23.
2017
Formation of Extrachromosomal Circular DNA from Long Terminal Repeats of Retrotransposons in Saccharomyces cerevisiae.
G3: Genes, Genomes, Genetics.
6.
2016
High diversity of picornaviruses in rats from different continents revealed by deep sequencing.
Emerging Microbes & Infections.
5.
2016
Identification of Known and Novel Recurrent Viral Sequences in Data from Multiple Patients and Multiple Cancers.
Viruses.
8.
2016
Potential movement of transposable elements through DNA circularization.
Current Genetics.
62.
2016
Propionibacterium acnes: Disease-Causing Agent or Common Contaminant? Detection in Diverse Patient Samples by Next-Generation Sequencing.
Journal of Clinical Microbiology.
54.
2016
Substitutions of short heterologous DNA segments of intragenomic or extragenomic origins produce clustered genomic polymorphisms.
Proceedings of the National Academy of Sciences of the United States of America.
113.
2016
Characterizing novel endogenous retroviruses from genetic variation inferred from short sequence reads.
Scientific Reports.
5.
2015
Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites.
eLife.
4.
2015
Comprehensive Evaluation of Toxoplasma gondii VEG and Neospora caninum LIV Genomes with Tachyzoite Stage Transcriptome and Proteome Defines Novel Transcript Features.
PLoS ONE.
10.
2015
Draft Genome Sequence of the First Human Isolate of the Ruminant Pathogen Mycoplasma capricolum subsp. capricolum.
Microbiology Resource Announcements.
3.
2015
Investigation of Human Cancers for Retrovirus by Low-Stringency Target Enrichment and High-Throughput Sequencing.
Scientific Reports.
5.
2015
Target-Dependent Enrichment of Virions Determines the Reduction of High-Throughput Sequencing in Virus Discovery.
PLoS ONE.
10.
2015
The genomic and phenotypic diversity of Schizosaccharomyces pombe.
Nature Genetics.
47.
2015
Traces of ATCV-1 associated with laboratory component contamination.
Proceedings of the National Academy of Sciences of the United States of America.
112.
2015
Comparative genomics reveals insights into avian genome evolution and adaptation.
Science.
346.
2014
Fifty thousand years of Arctic vegetation and megafaunal diet.
Nature.
506.
2014
Genomic analysis of the causative agents of coccidiosis in domestic chickens.
Genome Research.
24.
2014
Transposable elements in cancer as a by-product of stress-induced evolvability.
Frontiers in Genetics.
5.
2014
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dataset
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Comprehensive Evaluation of Toxoplasma gondii VEG and Neospora caninum LIV Genomes with Tachyzoite Stage Transcriptome and Proteome Defines Novel Transcript Features.
public-library-of-science.
2015
Expected and observed proportion of reads in DNA shotgun libraries..
public-library-of-science.
2015
Expected and observed proportion of reads in RNA shotgun libraries..
public-library-of-science.
2015
Proportion of viral reads in shotgun libraries in comparison with virion-enriched libraries..
public-library-of-science.
2015
Quantity of virus in complex control sample material..
public-library-of-science.
2015
Sequencing required to reach threshold coverage of viral target genomes..
public-library-of-science.
2015
Full permafrost dataset.
dryad.
2014
Megafauna diet data.
dryad.
2014
Megafauna filtered data.
dryad.
2014
Megafauna sequence data.
dryad.
2014
Nematoda filtered sequence data.
dryad.
2014
Nematoda sequence data.
dryad.
2014
Reference database Arctic (ITSAst).
dryad.
2014
Reference database Arctic (ITSCyp).
dryad.
2014
Reference database Arctic (ITSPoa).
dryad.
2014
Reference database Arctic (gh).
dryad.
2014
Reference database Boreal (gh).
dryad.
2014
Reference database EMBL (ITSAst).
dryad.
2014
Reference database EMBL (ITSCyp).
dryad.
2014
Reference database EMBL (ITSPoa).
dryad.
2014
Reference database EMBL (gh).
dryad.
2014
Sheep diet data.
dryad.
2014
Sheep diet filtered data.
dryad.
2014
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Discovery of a divergent HPIV4 from respiratory secretions using second and third generation metagenomic sequencing.
Scientific Reports.
2013
Comparative Genomics of the Apicomplexan Parasites Toxoplasma gondii and Neospora caninum: Coccidia Differing in Host Range and Transmission Strategy.
public-library-of-science.
2012
Composition of N. caninum genome in comparison with T. gondii and P. falciparum..
public-library-of-science.
2012
Does Selection against Transcriptional Interference Shape Retroelement-Free Regions in Mammalian Genomes?.
public-library-of-science.
2008